cobrapy
Here are 33 public repositories matching this topic...
Docker image for a full ME model stack.
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Jun 8, 2017 - Jupyter Notebook
iPfal17 genome-scale metabolic reconstruction; lipid metabolism curation
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Jun 22, 2018 - Python
Repository of code and information developed for computational biology research at UGA
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Sep 4, 2018 - MATLAB
Proyecto para las redes metabolicas humanas.
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Jul 7, 2021 - HTML
Bioinformatics project analyzing cancer metabolism using computational modeling and analysis. The project was awarded the GIDI-UP: Summer Research Award and includes data, models, and scripts.
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Jan 5, 2024 - Jupyter Notebook
FBAhv: FBA analysis of host-virus metabolic model (read related publication at: https://www.life-science-alliance.org/content/4/1/e202000869)
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Oct 2, 2020 - Python
findCP core package - find ChokePoint reactions in genome-scale metabolic models
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Aug 18, 2021 - HTML
A class based on COBRApy to handle quantitative mutations on metabolic models.
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Jun 17, 2022 - Jupyter Notebook
Utility to simplify obtaining information from genome-scale models as well as their manipulation. This implementation is available only for working with COBRApy.
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Mar 13, 2020 - Jupyter Notebook
Shiny app for visualization of the toy GENREs
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Jul 14, 2021 - R
diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library
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Jul 18, 2024 - Python
ECMproject is a standalone python program, which enumerates Elementary Conversion Modes (ECMs) of metabolic models.
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May 2, 2024 - Jupyter Notebook
Adjusting for false discoveries in constraint- and sampling-based differential metabolic flux analysis
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Nov 3, 2023 - Jupyter Notebook
Multi-scale model of Metabolism In Cellular Systems
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Jan 24, 2024 - Java
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
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Feb 23, 2022 - Python
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