Collection of planning documents, visualizations, and presentations for my dissertation research. "Investigating Multidrug Resistance in Escherichia coli with Phylogenetics and Machine Learning"
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Updated
Jul 27, 2023 - Shell
Collection of planning documents, visualizations, and presentations for my dissertation research. "Investigating Multidrug Resistance in Escherichia coli with Phylogenetics and Machine Learning"
In silico PCR command line tool for typing Escherichia coli ST131
An optimal experimental design framework for accelerating knowledge discovery using gene expression data
Decipher polymorphism in E. coli strains with coevolutionary models
Supplementary information of Millard et al. 2023
Molecular docking is one of the molecular modeling methods that predicts the preferred orientation of one molecule (ligand) to another (receptor) when bound to each other to form a stable complex (lowest energy state).
Integrated development environment for the design of synthetic biological systems, from DNA sequence to systems level
Supplementary information of Millard et al. 2022
.m, .MAT, .PDF, .XLS files for "Canonical host-pathogen tradeoffs subverted by mutations with dual benefits"
13C metabolic flux analysis of the extracellular GL-GNT by-pass of E. coli
Exploring correlations in an isobaric labeling mass spectrometry-based proteomic data set
Predicting the regulatory role of CRP transcription factor in Escherichia coli
The AMRnet dashboard aims to make high-quality, robust and reliable genome-derived AMR surveillance data accessible to a wide audience
Escherichia coli Transcriptome Assembly from a Compendium of RNA-seq Data Sets
Data and tools necessary to construct iJL1678b-ME, a genome-scale model of E. coli K-12 MG1655 metabolism and expression
StxTyper uses a standardized algorithm to accurately type both known and unknown Shiga toxin operons from assembled genomic sequence.
Kinetic modeling of glucose and acetate metabolisms in E. coli
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