Multi-species size-based ecological modelling in R
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Updated
Aug 28, 2024 - R
Multi-species size-based ecological modelling in R
FSA (Fisheries Stock Assessment) package provides R functions to conduct typical introductory fisheries analyses.
Stochastic surplus Production model in Continuous Time
A package for simulating marine mammal abundance and calculating reference points.
Expanding ocean food production under climate change
A bundle of analytics tools for fisheries scientists
R code for the Shiny interface for the Kuskokwim River Chinook salmon In-season Bayesian Risk Assessment Tool (i.e., "the P* Model")
Catch, Length, and Specimen Data Import Program Instructions for at sea survey data for AFSC's Gulf of Alaska and Bering Sea groundfish surveys.
Computer code to accompany "An Introduction to Bayesian Modeling and Inference for Fisheries Scientists
This package helps fisheries scientists collect growth data from calcified structures and back-calculate estimated lengths at previous ages. The package is intended to replace much of the functionality provided by the now out-dated fishBC software.
Fisheries Management Assessment Tool
A spatially explicit individual-based food web model for a large ecosystem
This repository contains R code for my analysis of the genetic connectivity of Lane Snapper (Lutjanus synagris) across the Gulf of Mexico, the southeastern U.S. coast, and Belize. It includes data filtering, population structure analysis, Hardy-Weinberg equilibrium testing, and gene flow estimation, essential for fisheries management.
A Management Strategy Evaluation (MSE) framework using FLBEIA and Gadget
Data and code used in "Transient demographic dynamics of recovering fish populations shaped by past climate variability, harvest, and management"
A spatial overlay tool in R for estimating EU fisheries activities inside or outside spatial restriction areas
Source code to build my dissertation using bookdown
Estimation of spatial-temporal variability of fish biomass and production using survey data
Analysis and code to support the paper "Overfishing drives over one third of all sharks and rays toward a global extinction crisis" published in Current Biology on 6th September 2021
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