Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria
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Updated
Jul 29, 2013 - C
Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria
A WGS de novo assembler based on the FMD-index for large genomes
Targeted Fusion Caller (C)
Find target sites for the miRNAs in genomic sequences
Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.
🍶Systems-biology approach to GWAS.
Short reads aligner for NIPT/CNV
De novo genome assembly and multisample variant calling
Model and predict short DNA sequence features with neural networks
Calculate Peak-to-Trough Ratio (PTR), plot coverage graph, and perform quality control over contigs in a single pipeline integrating Glimmer3, Bowtie2, Sickle, and algorithms in R.
Flexible genotype query among 30,000+ samples whole-genome
A tool to extract mappable reads from various library preparation protocols.
Performs memory-efficient reservoir sampling on very large input files delimited by newlines
Converts DNA input to amino acid sequence.
Command-line utility for conducting fast set theoretical operations and genetic distance estimation on biological sequence variant data.
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