Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
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Updated
Jul 27, 2024 - C
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
A versatile pairwise aligner for genomic and spliced nucleotide sequences
GenomeTools genome analysis system.
Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
🔬 BEDOPS: high-performance genomic feature operations
Finds SNP sites from a multi-FASTA alignment file
Sequence-to-graph mapper and graph generator
De novo genome assembly and multisample variant calling
Standalone C library for assembling Illumina short reads in small regions
Tools for manipulating sequence graphs in the GFA and rGFA formats
A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
A WGS de novo assembler based on the FMD-index for large genomes
Performs memory-efficient reservoir sampling on very large input files delimited by newlines
TAD calling, phase imputation, 3D modeling and more for diploid single-cell Hi-C (Dip-C) and general Hi-C
Model and predict short DNA sequence features with neural networks
Flexible genotype query among 30,000+ samples whole-genome
A benchmark suite to study the performance characteristics of genomics applications
My experimental tools on top of htslib. NOT OFFICIAL!!!
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