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32 public repositories
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dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).
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Mar 29, 2023
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🐳 Bio-dockers: dockerized bioinformatic tools
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May 14, 2024
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Docker container for bioinformatics tools and pipelines
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Jan 17, 2024
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🐳 💻 Docker recipe for meme-suite
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Apr 21, 2019
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A ready to go GLIMPSE docker image.
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Jan 18, 2022
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A fully containerized Bioinformatics environment for Assembly and Genomic Annotation
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Feb 27, 2023
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A collection of Dockerfiles for different containers I use.
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Aug 29, 2024
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Docker for running VAST-TOOLS
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Oct 19, 2018
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Build Docker container for HISAT2 and (optionally) convert to Apptainer/Singularity.
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Feb 22, 2023
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A Jupyter Docker Stack for Plant Scientists and Breeders
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Aug 29, 2023
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Repository for running SeekDeep in a Docker Container
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Aug 17, 2023
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Generates a VCF of the Single Nucleotide Variant Mutational Space of a genomic region or gene based on the Reference Genome
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Jan 23, 2023
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Build Docker container for Picard Tools and (optionally) convert to Apptainer/Singularity.
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Feb 28, 2023
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Build Docker container for RseQC and (optionally) convert to Apptainer/Singularity.
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Aug 23, 2024
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Build Docker container for Samtools software and (optionally) convert to Apptainer/Singularity
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Feb 14, 2023
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Build Docker container for BWA and (optionally) convert to Apptainer/Singularity.
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Mar 3, 2023
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Build Docker container for FastQ Screen software and (optionally) convert to Apptainer/Singularity.
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Feb 17, 2023
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Nov 17, 2019
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Pipelines for gene and TE annotation of pangenomes.
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Apr 23, 2019
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Build Docker container for MultiQC and (optionally) convert to Apptainer/Singularity.
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Feb 28, 2023
Dockerfile
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