Automated Tool for Global Screening Array analysis
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Updated
Oct 13, 2023 - Python
Automated Tool for Global Screening Array analysis
Select best protein codeing genes from models Generated from MAKER2, Cufflinks and any de novo assembling programs. Previously called MCOT, with this publication (http://www.sciencedirect.com/science/article/pii/S0965174815000144).
A collection of classes and methods for the analysis of 3C-based sequencing data.
This repository covers research paper implementations in the field of Genomics, Next Generation Sequencing, Bioinformatics and Machine Learning.
An interface and processing pipeline for multi-contact spatial genomics data
Convert genomic coordinates from the Human Genome version 19 (hg19) to version 38 (hg38)
an open-source (GPLv3) standalone Python package to analyze optical mapping data, with de novo repeat motif detection and analysis capabilities
single-cell functional genomics analysis platform
wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
Nanopore long read assembly data pipeline for phage genomes
Tuberculosis@LOG and NPR, Macrophage gene expression time series.
Host-specific gene content in Honeybee and Bumblebee gut bacteria
Central repository for generally useful scripts
A toolset for data pipelines in Genomics
Python file with many useful functions that could be exploited to analyze DNA or RNA sequences
API Tool to collect gene expression pathways from Pubmed for new COVID19 research .
Snakemake wrapper around the Arima Capture Hi-C (CHiC) workflow
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