A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
-
Updated
Aug 15, 2023 - Python
A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
[a.a. 22/23] A. Aquino, N. Gagliarde
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
MAPle provides three different modules for the analysis of paired-end short read metagenomic data
utility scripts for metagenomics, RNAseq etc. reads processing.
XGBoost implementation for bacteria family identification
Tools to handle metagenomic data manipulation
Phyrvm: A one-stop software solution for RNA virus mining and host-association prediction
Metagenomic Analysis Pipeline for Food Animals
The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences
MAGqual is a command line tool to evaluate the quality of metagenomic bins and generate recommended metadata in line with the MIMAG standards
Annotation Summary for MG-Rast -> Megan6 Annotations
This is a python package for analysis of metagenomics data.
ASAL - A simple, automated pipeline for metagenomic analysis.
The purpose of this repository is the metagenomic analysis of FastQ files
Creates a simple OTU table from Kraken2 report.
discover-virome: identify and quantify viruses from metagenomic assemblies
A repository as a Supplementary Methods of Moulana et al., 2019
Basic work flow and scripts to analyze Viral metagenomics: Trimming, quality checking, contamination removal and annotation
Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)
Add a description, image, and links to the metagenomic-analysis topic page so that developers can more easily learn about it.
To associate your repository with the metagenomic-analysis topic, visit your repo's landing page and select "manage topics."