The MG-RAST Backend -- the API server
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Updated
Apr 27, 2023 - Perl
The MG-RAST Backend -- the API server
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
StaG Metagenomic Workflow Collaboration
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Miscellaneous functions for metagenomic analysis.
Make Picrust2 Output Analysis and Visualization Easier
MerCat: python code for versatile k-mer counting and diversity estimation for database independent property analysis for meta -ome data
Calculate confidence scores from Kraken2 output
VirBot: a protein-based RNA virus detector for metagenomic data
Fast in-silico normalization algorithm for NGS data
Genome-on-Diet is a fast and memory-frugal framework for exemplifying sparsified genomics for read mapping, containment search, and metagenomic profiling. It is much faster & more memory-efficient than minimap2 for Illumina, HiFi, and ONT reads. Described by Alser et al. (preliminary version: https://arxiv.org/abs/2211.08157).
Graph-based assembly phasing
iMAP v1.0 (Pre-release): Integrated Microbiome Analysis Pipeline
A graphical user interface for a genomic contamination filtering pipeline to filter out reads from metagenomic files
LRBinner is a long-read binning tool published in WABI 2021 proceedings and AMB.
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
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