Project for the course of Network Based Data Analysis 💻
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Updated
Sep 5, 2024
Project for the course of Network Based Data Analysis 💻
GEO microarray data analysis
Discriminant Analysis with Network PROcessing
Collection of gene expression datasets
A python library to develop genomic data simulators
My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).
An Efficeint and Fast Wrapper-based High-dimensional Feature Selection(SIFE) in MATLAB
protGear is a package for protein microarray data processing just before the main analysis.
This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.
A pipeline to analyze DNA microarrays by Agilent.
Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more
Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more
Deep learning methods for feature selection in gene expression autism data.
Differential expression analysis using R 🧬
Code for the future "Classification of microarray data" paper.
EXIS is an interactive R shiny application for isoform-specific expression analysis.
Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia
Use Deep Learning Methods to analyze gene based microarray data to make classifcations on diseases, especially cancers, where the model is going to identify cancer stages for different cancers.
A visualization support tool for advanced hierarchical clustering analysis. MLCut allows cutting dendrograms at multiple heights/levels. In other words, it allows to set multiple local similarity thresholds in potentially large dendrograms. It uses two coordinated views, one for the dentrogram (radial layout), and another for the original multid…
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