Simple lattice models for cross-feeding species
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Updated
Aug 28, 2024 - Python
Simple lattice models for cross-feeding species
A repository of reference genome-scale metabolic models of marine microbes
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
Script repository related to the data processing and analyses of the study "Evidence of habitat specificity in sponge microbiomes from Antarctica"
Personal website
From Waste to Feed | Insect Biotech Research Group
Materials and presentation for the 2023 ISB Microbiome course.
Materials and presentation for the 2022 ISB Microbiome course.
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
Tools for visualising microbial community amplicon data
Microbial co-occurrence network reveals climate and geographic patterns for soil diversity on the planet
Pipepline for the standard quantification of microbial guilds from metagenomic samples.
BM211 workshop materials
Visualize deep ocean biogeochemical sediment samples in 2D and 3D
Agricultural practices in cropland, like soil tillage and fertilizer applications, profoundly alter soil physical and chemical properties over time.
Suppressing bacteria in microbial communities with reinforcement learning
lake itag measurements over nineteen years
PubMed trend analysis of ecological keywords
Microbiome data simulator for power analysis
Environmental metagenomics, Spring 2023, Physalia Courses
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