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Nov 24, 2017 - R
outbreak-detection
Here are 12 public repositories matching this topic...
In this repo. , "Cost Effective Lazy Forward Selection" Algorithm is implemented from scratch in python with only numpy library.
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Dec 16, 2020
A Disease Outbreak Assistance system using machine learning and Artifitial Intelligence
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Jan 12, 2023 - Python
Software supporting M. Cavallaro, et al., Cluster detection with random neighbourhood covering: Application to invasive Group A Streptococcal disease. PLoS Comput Biol 18(11): e1010726 (2022) https://doi.org/10.1371/journal.pcbi.1010726.
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Mar 1, 2023 - R
Implementation of Complex Networks Algorithms
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Apr 26, 2023 - Jupyter Notebook
rancovr: Cluster detection in R with RAndom Neighbourhood COVeRing
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May 19, 2023 - R
Epidemiological surveillance in Python
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Mar 20, 2024 - Python
R scripts used in M Cavallaro, L Dyson, MJ Tildesly, D Todkill & MJ Keeling (2023) Spatio-temporal surveillance and early detection of SARS-CoV-2 variants of concern. J. R. Soc. Interface. 20: 20230410. 20230410.
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Dec 12, 2023 - R
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Jan 28, 2024 - Python
cg/wgMLST allele calling software, schema evaluation and allele distance estimation for outbreak reserch.
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May 2, 2024 - Python
BSR-Based Allele Calling Algorithm
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Sep 9, 2024 - HTML
metagenomics pipeline supporting The UnO Project for identifying pathogens in common across outbreak samples
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Sep 12, 2024 - Nextflow
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