qiime2
Here are 14 public repositories matching this topic...
Command line tool that writes commands to run one by one to perform analyses (mainly using qiime2) on a HPC running Slurm, Torque or none of these.
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Jun 12, 2024 - Python
QIIME 2 plugin for analyzing biological pathway information based on gene family abundances
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Sep 3, 2024 - Python
Effect size calculations for microbiome data
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Apr 26, 2022 - Python
q2-shared_asv is a QIIME 2 plugin for shared ASV analysis.
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Sep 18, 2023 - Python
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Aug 13, 2024 - Python
Snakemake pipeline for 16S, 18S and ITS metagenomics using qiime2
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Jan 20, 2024 - Python
qiime2 decontam plugin
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Jan 21, 2022 - Python
A Python package for microbiome sequencing analysis with QIIME 2
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Jan 28, 2024 - Python
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
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Jun 14, 2024 - Python
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