Workflow for differential gene expression analysis for non-replicate samples using DEGseq
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Updated
Feb 11, 2024 - R
Workflow for differential gene expression analysis for non-replicate samples using DEGseq
Differential gene expression analysis for samples with replicates using STAR-DeSeq2 pipeline
Work at NIST: snakemake workflow to get short tandem repeats from WGS GIAB samples. R script for downstream processing and concordance
build xaringan slides with snakemake
Repository to process ITS amplicon sequencing data and produce figures for Schneider et al (2021)
Integrated Mapping and Profiling of Allelically-expressed Loci with Annotations
a small exercise using Angrist & Krueger's 1991 data in a reproducible workflow
Snakemake workflow for transposable element RNA-Seq using TEtranscripts
Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.
hla-typing by optitype & polysolver , detect loh by lohhla.
This repository has snakemake scripts for salmon-deseq2 pipeline for RNAseq data analysis
Simple template for running snakemake with R
Repo to analyze population genetic data with many different methods
reproducible research project template for R using Renv and snakemake with an econ application
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