reproducible research project template for R using Renv and snakemake with an econ application
-
Updated
Apr 19, 2022 - R
reproducible research project template for R using Renv and snakemake with an econ application
Repo to analyze population genetic data with many different methods
Repository to process ITS amplicon sequencing data and produce figures for Schneider et al (2021)
a small exercise using Angrist & Krueger's 1991 data in a reproducible workflow
Simple template for running snakemake with R
hla-typing by optitype & polysolver , detect loh by lohhla.
Workflow for differential gene expression analysis for non-replicate samples using DEGseq
This repository has snakemake scripts for salmon-deseq2 pipeline for RNAseq data analysis
Differential gene expression analysis for samples with replicates using STAR-DeSeq2 pipeline
Snakemake workflow for transposable element RNA-Seq using TEtranscripts
Integrated Mapping and Profiling of Allelically-expressed Loci with Annotations
Work at NIST: snakemake workflow to get short tandem repeats from WGS GIAB samples. R script for downstream processing and concordance
build xaringan slides with snakemake
Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.
Add a description, image, and links to the snakemake-workflow topic page so that developers can more easily learn about it.
To associate your repository with the snakemake-workflow topic, visit your repo's landing page and select "manage topics."