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Aug 5, 2024 - R
snakemake-workflow
Here are 15 public repositories matching this topic...
Pipeline for consensus prediction of cell types in single-cell RNA sequencing data.
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Jul 17, 2024 - R
Snakemake workflow for transposable element RNA-Seq using TEtranscripts
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Jun 14, 2024 - R
Differential gene expression analysis for samples with replicates using STAR-DeSeq2 pipeline
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Apr 6, 2024 - R
hla-typing by optitype & polysolver , detect loh by lohhla.
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Mar 28, 2024 - R
Workflow for differential gene expression analysis for non-replicate samples using DEGseq
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Feb 11, 2024 - R
Integrated Mapping and Profiling of Allelically-expressed Loci with Annotations
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Oct 31, 2023 - R
Work at NIST: snakemake workflow to get short tandem repeats from WGS GIAB samples. R script for downstream processing and concordance
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Jun 14, 2023 - R
Simple template for running snakemake with R
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Jan 31, 2023 - R
reproducible research project template for R using Renv and snakemake with an econ application
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Apr 19, 2022 - R
build xaringan slides with snakemake
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Mar 12, 2021 - R
Repository to process ITS amplicon sequencing data and produce figures for Schneider et al (2021)
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Jan 5, 2021 - R
a small exercise using Angrist & Krueger's 1991 data in a reproducible workflow
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Oct 2, 2020 - R
Repo to analyze population genetic data with many different methods
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Oct 23, 2019 - R
This repository has snakemake scripts for salmon-deseq2 pipeline for RNAseq data analysis
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Jun 7, 2018 - R
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