Lineage inference from Gene Therapy assays with insertional mutagenesis and somatic mutations
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Updated
Aug 23, 2024 - R
Lineage inference from Gene Therapy assays with insertional mutagenesis and somatic mutations
An R package for mutation quality control of cancer genomic sequening dataset
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
Tumor-only variant calling
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
a Nextflow ACE-Seq calling and annotation pipeline based on DKFZ-ODCF/ACEseqWorkflow
Clone identification from single-cell data
This R package repository performs optimal transport and kernel regression hypothesis testing. Functions to perform large scale simulations are also provided.
This repo contains an R package to execute ROKET's real data analysis workflow on TCGA cancer types
Multi-sample somatic variant caller
📦 An R package for inferring the mutational exposures difference between groups.
R Shiny based lightweight mutation exploration tool
Datasets and analysis results released with the REVOLVER package for Cancer Evolution.
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