Bioinformatics Programming - Transcriptome Assembly
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Updated
Nov 5, 2023 - Jupyter Notebook
Bioinformatics Programming - Transcriptome Assembly
collab | DFC
A Google Colab notebook/web server for predicting splice sites from a single sequence using Pangolin
A package dedicated to the simulation of sequencing read data corresponding to randomly generated genes with predifined splice-models for the evaluation of transcriptome assembly tools
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
A tool to determine locations of potential novel intronic splicing
Calculate five major splicing events using rMATS followed by annotation
This is Scramble, a command-line program written in C that encrypts files using inversion, reversal, hashing, or splicing algorithms.
Docker image for running leafcutter and dasper
10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/
all the scripts to reproduce the results in the splam paper
A simple Perl script to compute DeltaESRSeq to predict exon skipping induced by exonic variants
Add a description, image, and links to the splicing topic page so that developers can more easily learn about it.
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