A pipeline to to determine the repeat content of genes and their neighboring regions.
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Updated
Jun 2, 2017 - Python
A pipeline to to determine the repeat content of genes and their neighboring regions.
Tn3 Transposon/Toxin Finder
Composite Transposon Finder
A pipeline for identification and annotation of transposable element (TE) insertions using next generation sequencing (NGS) data.
A package to count reads mapping on transposable elements subfamilies, families and classes.
Useful python scripts for genomic analyses
Distribution of TEs and their relationship to genes in host genome
Interrogating the influence of Transposable Element insertions on transcriptional dynamics
Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
Build your own deep learning transposable elements classifier with ease.
Find and classify transposable elements using convolutional neural networks.
Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte
Scripts I have written as a graduate research assistant
A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis
MCHelper: An automatic tool to curate transposable element libraries
TE Classifier Using CNN
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
High-precision TE Annotator
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