High-precision TE Annotator
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Updated
Sep 3, 2024 - Python
High-precision TE Annotator
Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
Earl Grey: A fully automated TE curation and annotation pipeline
Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com/articles/10.1186/s13100-022-00264-4
A Snakemake workflow for single copy gene, transposable elements and tRNA expression analysis
A pipeline to detect chimeric transcripts derived from genes and transposable elements.
Comprehensive TE insertion identification with WGS/WES data from multiple sequencing technics
TE Classifier Using CNN
MCHelper: An automatic tool to curate transposable element libraries
Scripts I have written as a graduate research assistant
Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte
Find and classify transposable elements using convolutional neural networks.
Build your own deep learning transposable elements classifier with ease.
Interrogating the influence of Transposable Element insertions on transcriptional dynamics
Distribution of TEs and their relationship to genes in host genome
Useful python scripts for genomic analyses
A package to count reads mapping on transposable elements subfamilies, families and classes.
A pipeline for identification and annotation of transposable element (TE) insertions using next generation sequencing (NGS) data.
Composite Transposon Finder
Tn3 Transposon/Toxin Finder
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