VMD plugin to calculate and visualize clusters of conformations for a trajectory
-
Updated
Oct 24, 2018 - Tcl
VMD plugin to calculate and visualize clusters of conformations for a trajectory
Using VMD and NAMD for molecular dynamics simulation of protein PDB files.
A few useful vmd trajectory analysis scripts
vmdAssist is a VMD extension with tools that help us edit or create new structures like nanotube and nanotorus.
Colorblind-friendly, perceptually uniform palettes for vmd
TCL-TK for VMD.
Display the VMD "dynamic" Field (beta, charge, occupancy, ...)
A script to convert multiple pdb files to a single xyz file using VMD
Rendering 3D-Rashba-Pockets with the help of Julia and VMD
Generate Carbon Nano-Cones using VMD
Add a description, image, and links to the vmd topic page so that developers can more easily learn about it.
To associate your repository with the vmd topic, visit your repo's landing page and select "manage topics."