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DESCRIPTION
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DESCRIPTION
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Package: CytoSimplex
Type: Package
Title: Simplex Visualization of Cell Fate Similarity in Single-Cell Data
Version: 0.1.99
Authors@R: c(
person(given = 'Yichen', family = 'Wang', email = '[email protected]',
role = c('aut', 'cre'), comment = c(ORCID = "0000-0003-4347-5199")),
person(given = 'Jialin', family = 'Liu', email = '[email protected]',
role = c('aut'), comment = c(ORCID = "0000-0002-9984-7695")),
person(given = 'Joshua', family = 'Welch', email = '[email protected]',
role = c('cph'))
)
Maintainer: Yichen Wang <[email protected]>
Description: Create simplex plots to visualize the similarity between
single-cells and selected clusters in a 1-/2-/3-simplex space.
Velocity information can be added as an additional layer.
See Liu J, Wang Y et al (2023) <doi:10.1101/2023.12.07.570655> for more details.
URL: https://welch-lab.github.io/CytoSimplex/, https://github.com/welch-lab/CytoSimplex
License: GPL-3
Encoding: UTF-8
LazyData: true
Depends:
stats,
methods,
grDevices,
R (>= 3.6)
LinkingTo: Rcpp, RcppArmadillo
biocViews:
Imports:
cli,
ggplot2,
Matrix,
plot3D,
plotly,
RColorBrewer,
Rcpp,
rlang,
viridis
Suggests:
hdf5r,
knitr,
magick,
patchwork,
rmarkdown,
Seurat,
SeuratObject,
SingleCellExperiment,
SummarizedExperiment,
testthat (>= 3.0.0)
RoxygenNote: 7.3.1
Config/testthat/edition: 3
VignetteBuilder: knitr