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setup.cfg
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setup.cfg
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[metadata]
name = velovae
version = 0.1.3-beta
author = Yichen Gu
author_email = [email protected]
description = Bayesian Inference of RNA Velocity
long_description = file: README.rst
url = https://github.com/welch-lab/VeloVAE
keywords =
RNA velocity
single-cell RNA
variational autoencoder
deep generative Model
bayesian inference
ordinary differential equation
license = BSD 3-Clause License
classifiers =
Development Status :: 4 - Beta
Intended Audience :: Science/Research
License :: OSI Approved :: BSD License
Natural Language :: English
Operating System :: MacOS :: MacOS X
Operating System :: Microsoft :: Windows
Operating System :: POSIX :: Linux
Programming Language :: Python :: 3
Programming Language :: Python :: 3.7
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Topic :: Scientific/Engineering :: Bio-Informatics
Topic :: Scientific/Engineering :: Visualization
[options]
package_dir =
= ./
package = find:
install_requires =
torch>=1.8.0
anndata>=0.8.0
scanpy>=1.5
scvelo>=0.2.3
umap-learn>=0.3.10
numba>=0.41.0
numpy>=1.17
scipy>=1.4.1
pandas>=0.23
matplotlib>=3.3.0
loess>=2.1.2
scikit-learn>=1.2.2
tqdm<=4.62.3
igraph>=0.10.4
pynndescent>=0.5.7
hnswlib>=0.6.2
requires_python = ">=3.6"
[options.packages.find]
where = ./
exclude =
docs
notebooks
Rscript
tests
others
go