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Just now, I tried using my entire dataset without filtering any genes, and the above problem doesn't appear this time. But rankIntrSpatialVar(cs) gives "Number of spatially variable interactions: 0 out of 0 high-quality interactions." Therefore, when I print the result of showIntr, it gives NA. Any suggestions on this?
It looks like the problem is likely to be related to the function changeUniprot(). Did you skip this step in the tutorial or did you used some other customized database?
Hi,
When I ran inferIntrScore() and inferSignif() on my own dataset, it gave following messages:
I guess it's because genes in my dataset doesn't overlap with the database you used. Do you have any suggestions?
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