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CMakeLists.txt
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CMakeLists.txt
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cmake_minimum_required (VERSION 3.8)
cmake_policy(SET CMP0069 NEW)
project(usher)
if(NOT CMAKE_BUILD_TYPE)
set(CMAKE_BUILD_TYPE "RelWithDebInfo")
endif()
set(usher_VERSION "?.?.?")
find_library(ISAL_LIB isal)
execute_process(COMMAND head -n1 ${CMAKE_SOURCE_DIR}/version.txt OUTPUT_VARIABLE VERSION)
string(REGEX REPLACE "^v([0-9]+)\\..*" "\\1" VERSION_MAJOR "${VERSION}")
string(REGEX REPLACE "^v[0-9]+\\.([0-9]+).*" "\\1" VERSION_MINOR "${VERSION}")
string(REGEX REPLACE "^v[0-9]+\\.[0-9]+\\.([0-9]+).*" "\\1" VERSION_PATCH "${VERSION}")
if ("${VERSION_PATCH}" MATCHES "[0-9]+")
set(usher_VERSION "${VERSION_MAJOR}.${VERSION_MINOR}.${VERSION_PATCH}")
endif()
message(STATUS "${usher_VERSION}")
configure_file(src/version.hpp.in version.hpp)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++17 -Wall -pipe -g -ggdb3 -Wno-unused-function -Wno-deprecated-declarations")
#-DDEBUG_PARSIMONY_SCORE_CHANGE_CORRECT -fsanitize=address -DCHECK_PAR_MAIN -DEASY_DEBUG -DSTOP_ON_ERROR -DDETAILED_MERGER_CHECK -O0
set(CMAKE_CXX_FLAGS_DEBUG " -fno-eliminate-unused-debug-symbols -O0")
set(CMAKE_CXX_FLAGS_RELWITHDEBINFO "-DNDEBUG -O3")
set(CMAKE_CXX_FLAGS_RELEASE "-DNDEBUG -O3 ")
set(CMAKE_INCLUDE_CURRENT_DIR ON)
if(DEFINED Protobuf_PATH)
find_package(Protobuf REQUIRED HINTS ${Protobuf_PATH})
else()
find_package(Protobuf REQUIRED)
endif()
# Print version messages
if(Protobuf_FOUND)
message(STATUS "Using Protocol Buffers ${Protobuf_VERSION}")
endif()
find_package(MPI REQUIRED)
include_directories(SYSTEM ${MPI_INCLUDE_PATH})
include_directories(${Protobuf_INCLUDE_DIRS})
include(${TBB_DIR}/cmake/TBBBuild.cmake)
tbb_build(TBB_ROOT ${TBB_DIR} CONFIG_DIR TBB_DIR MAKE_ARGS tbb_cpf=1)
find_package(TBB REQUIRED tbbmalloc tbbmalloc_proxy tbb_preview)
FIND_PACKAGE(Boost COMPONENTS program_options iostreams filesystem date_time REQUIRED)
#find_package(OpenMP REQUIRED)
INCLUDE_DIRECTORIES(${Boost_INCLUDE_DIRS})
AUX_SOURCE_DIRECTORY(src/matOptimize/Profitable_Moves_Enumerators New_Profitable_Moves_Enumerators)
AUX_SOURCE_DIRECTORY(src/matOptimize/apply_move patch_tree)
AUX_SOURCE_DIRECTORY(src/check_samples_place check_samples_place)
file(GLOB MATUTIL_SRCS "src/matUtils/*.cpp" "src/matUtils/*.hpp")
file(GLOB RIPPLES_SRCS "src/ripples/*.cpp" "src/ripples/*.hpp")
file(GLOB USHER_SAMPLED_SRCS "src/usher-sampled/static_tree_mapper/*" "src/usher-sampled/*.cpp" "src/usher-sampled/*.hpp")
file(GLOB RIPPLES_FAST_SRCS "src/ripples/ripples_fast/*.cpp" "src/ripples/ripples_fast/*.hpp")
file(GLOB RIPPLES_UTILS_SRCS "src/ripples/util/*.cpp" "src/ripples/util/*.hpp")
set_source_files_properties(src/mutation_annotated_tree.cpp PROPERTIES COMPILE_FLAGS -O3)
set_source_files_properties(src/usher-sampled/wait_debug.cpp PROPERTIES COMPILE_FLAGS -O0)
#set_source_files_properties(src/matOptimize/Profitable_Moves_Enumerators/range_tree.cpp PROPERTIES COMPILE_FLAGS -O0)
#set_source_files_properties(src/matOptimize/detailed_mutations_store.cpp PROPERTIES COMPILE_FLAGS -O0)
#set_source_files_properties(src/matOptimize/detailed_mutations_load.cpp PROPERTIES COMPILE_FLAGS -O0)
#set_source_files_properties(src/matOptimize/serializer_test.cpp PROPERTIES COMPILE_FLAGS -O0)
find_package(ZLIB)
if(DEFINED Protobuf_PATH)
add_executable(usher
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
src/usher_common.cpp
src/usher.cpp
)
add_executable(matUtils
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
${MATUTIL_SRCS}
)
add_executable(ripples
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
${RIPPLES_SRCS}
)
add_executable(ripples-fast
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
${RIPPLES_FAST_SRCS}
)
add_executable(usher-sampled
${USHER_SAMPLED_SRCS}
src/matOptimize/main_helper.cpp
src/matOptimize/detailed_mutations_store.cpp
src/matOptimize/detailed_mutations_load.cpp
src/matOptimize/mutation_annotated_tree.cpp
src/matOptimize/mutation_annotated_tree_node.cpp
src/matOptimize/mutation_annotated_tree_load_store.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
src/matOptimize/Mutation_Collection.cpp
src/matOptimize/check_samples.cpp
src/matOptimize/optimize_tree.cpp
src/matOptimize/condense.cpp
src/matOptimize/Fitch_Sankoff.cpp
src/matOptimize/main_load_tree.cpp
src/matOptimize/priority_conflict_resolver.cpp
src/usher-sampled/driver/main.cpp
${patch_tree}
${New_Profitable_Moves_Enumerators}
)
add_executable(ripplesUtils
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
src/matUtils/describe.cpp
${RIPPLES_UTILS_SRCS}
)
add_executable(ripplesInit
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
src/ripples/init/init_pipeline.cpp
src/ripples/init/main.cpp
)
add_executable(matOptimize
src/matOptimize/mutation_annotated_tree.cpp
src/matOptimize/mutation_annotated_tree_node.cpp
src/matOptimize/mutation_annotated_tree_load_store.cpp
src/matOptimize/detailed_mutations_store.cpp
src/matOptimize/detailed_mutations_load.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
src/matOptimize/main.cpp
src/matOptimize/optimize_tree.cpp
src/matOptimize/import_vcf_fast.cpp
src/matOptimize/condense.cpp
src/matOptimize/optimize_inner_loop.cpp
src/matOptimize/VCF_load_tree.cpp
src/matOptimize/main_load_tree.cpp
src/matOptimize/main_helper.cpp
src/matOptimize/Mutation_Collection.cpp
src/matOptimize/Fitch_Sankoff.cpp
src/matOptimize/check_samples.cpp
#src/matOptimize/priority_conflict_resolver_cross_only.cpp
src/matOptimize/priority_conflict_resolver.cpp
src/matOptimize/transpose_vcf/transposed_vcf_patch.cpp
${patch_tree}
${New_Profitable_Moves_Enumerators}
)
add_executable(compareVCF
src/mutation_annotated_tree.cpp
src/compareVCF.cpp
src/usher_mapper.cpp
)
add_executable(output_final_protobuf
src/matOptimize/mutation_annotated_tree.cpp
src/matOptimize/mutation_annotated_tree_node.cpp
src/matOptimize/detailed_mutations_load.cpp
src/matOptimize/mutation_annotated_tree_load_store.cpp
src/matOptimize/main_helper.cpp
src/matOptimize/Mutation_Collection.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
src/matOptimize/output_final_protobuf.cpp
)
add_executable(transpose_vcf
src/matOptimize/transpose_vcf/transpose_vcf_encode.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
)
add_executable(transposed_vcf_to_vcf
src/matOptimize/transpose_vcf/transposed_vcf_to_vcf.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
)
add_executable(transposed_vcf_to_fa
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
src/matOptimize/transpose_vcf/transposed_vcf_to_fa.cpp
)
add_executable(transposed_vcf_print_name
src/matOptimize/transpose_vcf/transposed_vcf_print_name.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
)
if(USHER_SERVER)
add_executable(usher_server
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
src/usher_common.cpp
src/usher_server.cpp
)
endif()
protobuf_generate(
LANGUAGE cpp
TARGET ripples
PROTOS parsimony.proto)
protobuf_generate(
LANGUAGE cpp
TARGET ripples-fast
PROTOS parsimony.proto)
protobuf_generate(
LANGUAGE cpp
TARGET compareVCF
PROTOS parsimony.proto)
protobuf_generate(
LANGUAGE cpp
TARGET usher
PROTOS parsimony.proto)
protobuf_generate(
LANGUAGE cpp
TARGET matUtils
PROTOS parsimony.proto)
protobuf_generate(
LANGUAGE cpp
TARGET usher-sampled
PROTOS parsimony.proto)
protobuf_generate(
LANGUAGE cpp
TARGET ripplesUtils
PROTOS parsimony.proto)
protobuf_generate(
LANGUAGE cpp
TARGET ripplesInit
PROTOS parsimony.proto)
protobuf_generate(
LANGUAGE cpp
TARGET matOptimize
PROTOS parsimony.proto)
protobuf_generate(
LANGUAGE cpp
TARGET matOptimize
PROTOS mutation_detailed.proto)
protobuf_generate(
LANGUAGE cpp
TARGET usher-sampled
PROTOS mutation_detailed.proto)
protobuf_generate(
LANGUAGE cpp
TARGET output_final_protobuf
PROTOS parsimony.proto)
protobuf_generate(
LANGUAGE cpp
TARGET output_final_protobuf
PROTOS mutation_detailed.proto)
protobuf_generate(
LANGUAGE cpp
TARGET matUtils
PROTOS taxodium.proto)
if(USHER_SERVER)
protobuf_generate(
LANGUAGE cpp
TARGET usher_server
PROTOS parsimony.proto)
endif()
else()
protobuf_generate_cpp(
PROTO_SRCS PROTO_HDRS
parsimony.proto)
protobuf_generate_cpp(
DETAILED_MUTATIONS_PROTO_SRCS
DETAILED_MUTATIONS_PROTO_HDRS
mutation_detailed.proto)
protobuf_generate_cpp(
TAXO_SRCS TAXO_HDRS
taxodium.proto)
add_executable(usher
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
src/usher_common.cpp
src/usher.cpp
${PROTO_SRCS}
${PROTO_HDRS}
)
add_executable(matUtils
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
${MATUTIL_SRCS}
${PROTO_SRCS}
${PROTO_HDRS}
${TAXO_SRCS}
${TAXO_HDRS}
)
add_executable(ripples
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
${RIPPLES_SRCS}
${PROTO_SRCS}
${PROTO_HDRS}
)
add_executable(ripples-fast
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
${RIPPLES_FAST_SRCS}
${PROTO_SRCS}
${PROTO_HDRS}
)
add_executable(usher-sampled
${USHER_SAMPLED_SRCS}
${PROTO_SRCS}
${PROTO_HDRS}
${DETAILED_MUTATIONS_PROTO_SRCS}
${DETAILED_MUTATIONS_PROTO_HDRS}
src/matOptimize/main_helper.cpp
src/matOptimize/detailed_mutations_store.cpp
src/matOptimize/detailed_mutations_load.cpp
src/matOptimize/mutation_annotated_tree.cpp
src/matOptimize/mutation_annotated_tree_node.cpp
src/matOptimize/mutation_annotated_tree_load_store.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
src/matOptimize/Mutation_Collection.cpp
src/matOptimize/reassign_states.cpp
src/matOptimize/check_samples.cpp
src/matOptimize/optimize_tree.cpp
src/matOptimize/condense.cpp
src/matOptimize/Fitch_Sankoff.cpp
src/matOptimize/main_load_tree.cpp
src/matOptimize/priority_conflict_resolver.cpp
src/usher-sampled/driver/main.cpp
${patch_tree}
${New_Profitable_Moves_Enumerators}
)
add_executable(ripplesUtils
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
src/matUtils/describe.cpp
${RIPPLES_UTILS_SRCS}
${PROTO_SRCS}
${PROTO_HDRS}
)
add_executable(ripplesInit
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
src/ripples/init/init_pipeline.cpp
src/ripples/init/main.cpp
${PROTO_SRCS}
${PROTO_HDRS}
)
add_executable(compareVCF
src/mutation_annotated_tree.cpp
src/compareVCF.cpp
src/usher_mapper.cpp
${PROTO_SRCS}
${PROTO_HDRS}
)
add_executable(matOptimize
src/matOptimize/mutation_annotated_tree.cpp
src/matOptimize/mutation_annotated_tree_node.cpp
src/matOptimize/mutation_annotated_tree_load_store.cpp
src/matOptimize/detailed_mutations_store.cpp
src/matOptimize/detailed_mutations_load.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
src/matOptimize/main.cpp
src/matOptimize/optimize_tree.cpp
src/matOptimize/import_vcf_fast.cpp
src/matOptimize/condense.cpp
src/matOptimize/VCF_load_tree.cpp
src/matOptimize/main_load_tree.cpp
src/matOptimize/main_helper.cpp
src/matOptimize/Mutation_Collection.cpp
src/matOptimize/Fitch_Sankoff.cpp
src/matOptimize/optimize_inner_loop.cpp
src/matOptimize/reassign_states.cpp
src/matOptimize/check_samples.cpp
#src/matOptimize/priority_conflict_resolver_cross_only.cpp
src/matOptimize/priority_conflict_resolver.cpp
src/matOptimize/transpose_vcf/transposed_vcf_patch.cpp
src/usher-sampled/utils.cpp
src/usher-sampled/Min_back_FS.cpp
${patch_tree}
${New_Profitable_Moves_Enumerators}
${PROTO_SRCS}
${PROTO_HDRS}
${DETAILED_MUTATIONS_PROTO_SRCS}
${DETAILED_MUTATIONS_PROTO_HDRS}
)
add_executable(check_samples_place
src/matOptimize/mutation_annotated_tree.cpp
src/matOptimize/mutation_annotated_tree_node.cpp
src/matOptimize/mutation_annotated_tree_load_store.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
src/matOptimize/Mutation_Collection.cpp
${check_samples_place}
${PROTO_SRCS}
${PROTO_HDRS}
${DETAILED_MUTATIONS_PROTO_SRCS}
${DETAILED_MUTATIONS_PROTO_HDRS}
)
#[[add_executable(output_final_protobuf
src/matOptimize/mutation_annotated_tree.cpp
src/matOptimize/mutation_annotated_tree_node.cpp
src/matOptimize/detailed_mutations_load.cpp
src/matOptimize/mutation_annotated_tree_load_store.cpp
src/matOptimize/main_helper.cpp
src/matOptimize/Mutation_Collection.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
src/matOptimize/output_final_protobuf.cpp
${PROTO_SRCS}
${PROTO_HDRS}
${DETAILED_MUTATIONS_PROTO_SRCS}
${DETAILED_MUTATIONS_PROTO_HDRS}
)]]
add_executable(transpose_vcf
src/matOptimize/transpose_vcf/transpose_vcf_encode.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
)
add_executable(transposed_vcf_to_vcf
src/matOptimize/transpose_vcf/transposed_vcf_to_vcf.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
)
add_executable(transposed_vcf_to_fa
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
src/matOptimize/transpose_vcf/transposed_vcf_to_fa.cpp
)
add_executable(transposed_vcf_print_name
src/matOptimize/transpose_vcf/transposed_vcf_print_name.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
)
if(USHER_SERVER)
add_executable(usher_server
src/mutation_annotated_tree.cpp
src/usher_mapper.cpp
src/usher_common.cpp
src/usher_server.cpp
${PROTO_SRCS}
${PROTO_HDRS}
)
add_executable(usher-sampled-server
${USHER_SAMPLED_SRCS}
${PROTO_SRCS}
${PROTO_HDRS}
${DETAILED_MUTATIONS_PROTO_SRCS}
${DETAILED_MUTATIONS_PROTO_HDRS}
src/matOptimize/main_helper.cpp
src/matOptimize/detailed_mutations_store.cpp
src/matOptimize/detailed_mutations_load.cpp
src/matOptimize/mutation_annotated_tree.cpp
src/matOptimize/mutation_annotated_tree_node.cpp
src/matOptimize/mutation_annotated_tree_load_store.cpp
src/matOptimize/mutation_annotated_tree_nuc_util.cpp
src/matOptimize/Mutation_Collection.cpp
src/matOptimize/reassign_states.cpp
src/matOptimize/check_samples.cpp
src/matOptimize/optimize_tree.cpp
src/matOptimize/condense.cpp
src/matOptimize/Fitch_Sankoff.cpp
src/matOptimize/main_load_tree.cpp
src/matOptimize/priority_conflict_resolver.cpp
src/usher-sampled/driver/socket.cpp
${patch_tree}
${New_Profitable_Moves_Enumerators}
)
endif()
endif()
if(SAVE_PROFILE)
if(DEBUG)
TARGET_COMPILE_OPTIONS(usher PRIVATE -DTBB_SUPPRESS_DEPRECATED_MESSAGES -DSAVE_PROFILE=1 -DDEBUG=1)
else(DEBUG)
TARGET_COMPILE_OPTIONS(usher PRIVATE -DTBB_SUPPRESS_DEPRECATED_MESSAGES -DSAVE_PROFILE=1)
endif(DEBUG)
else(SAVE_PROFILE)
if(DEBUG)
TARGET_COMPILE_OPTIONS(usher PRIVATE -DTBB_SUPPRESS_DEPRECATED_MESSAGES -DDEBUG=1)
else(DEBUG)
TARGET_COMPILE_OPTIONS(usher PRIVATE -DTBB_SUPPRESS_DEPRECATED_MESSAGES)
endif(DEBUG)
endif(SAVE_PROFILE)
#set_property(TARGET matOptimize PROPERTY INTERPROCEDURAL_OPTIMIZATION TRUE)
TARGET_LINK_LIBRARIES(compareVCF PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES} ZLIB::ZLIB) # OpenMP::OpenMP_CXX)
TARGET_LINK_LIBRARIES(check_samples_place PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES} ZLIB::ZLIB ${MPI_CXX_LIBRARIES} ${MPI_CXX_LINK_FLAGS} ${ISAL_LIB} ) # OpenMP::OpenMP_CXX)
TARGET_LINK_LIBRARIES(matOptimize PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES} ZLIB::ZLIB ${MPI_CXX_LIBRARIES} ${MPI_CXX_LINK_FLAGS} ${ISAL_LIB} ) # OpenMP::OpenMP_CXX)
TARGET_LINK_LIBRARIES(usher-sampled PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES} ZLIB::ZLIB ${MPI_CXX_LIBRARIES} ${MPI_CXX_LINK_FLAGS} ${ISAL_LIB} ) # OpenMP::OpenMP_CXX)
#TARGET_LINK_LIBRARIES(output_final_protobuf PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES} ZLIB::ZLIB ${MPI_CXX_LIBRARIES} ${MPI_CXX_LINK_FLAGS} ) # OpenMP::OpenMP_CXX)
TARGET_LINK_LIBRARIES(transpose_vcf PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES} ZLIB::ZLIB) # OpenMP::OpenMP_CXX)
TARGET_LINK_LIBRARIES(transposed_vcf_to_vcf PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES} ZLIB::ZLIB) # OpenMP::OpenMP_CXX)
TARGET_LINK_LIBRARIES(transposed_vcf_to_fa PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES} ZLIB::ZLIB) # OpenMP::OpenMP_CXX)
TARGET_LINK_LIBRARIES(transposed_vcf_print_name PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES} ZLIB::ZLIB) # OpenMP::OpenMP_CXX)
TARGET_LINK_LIBRARIES(usher PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES} ZLIB::ZLIB) # OpenMP::OpenMP_CXX)
target_include_directories(usher PUBLIC "${PROJECT_BINARY_DIR}")
TARGET_COMPILE_OPTIONS(matUtils PRIVATE -DTBB_SUPPRESS_DEPRECATED_MESSAGES)
TARGET_LINK_LIBRARIES(matUtils PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES}) # OpenMP::OpenMP_CXX)
TARGET_LINK_LIBRARIES(ripplesUtils PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES}) # OpenMP::OpenMP_CXX)
TARGET_LINK_LIBRARIES(ripplesInit PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES}) # OpenMP::OpenMP_CXX)
TARGET_COMPILE_OPTIONS(ripples PRIVATE -DTBB_SUPPRESS_DEPRECATED_MESSAGES)
TARGET_LINK_LIBRARIES(ripples PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES}) # OpenMP::OpenMP_CXX)
TARGET_LINK_LIBRARIES(ripples-fast PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES}) # OpenMP::OpenMP_CXX)
if(USHER_SERVER)
TARGET_COMPILE_OPTIONS(usher_server PRIVATE -DTBB_SUPPRESS_DEPRECATED_MESSAGES)
TARGET_LINK_LIBRARIES(usher_server PRIVATE stdc++ ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES} ZLIB::ZLIB) # OpenMP::OpenMP_CXX)
TARGET_LINK_LIBRARIES(usher-sampled-server PRIVATE stdc++ ${CMAKE_DL_LIBS} ${Boost_LIBRARIES} ${TBB_IMPORTED_TARGETS} ${Protobuf_LIBRARIES} ZLIB::ZLIB ${MPI_CXX_LIBRARIES} ${MPI_CXX_LINK_FLAGS} ${ISAL_LIB} ) # OpenMP::OpenMP_CXX)
install(TARGETS usher matUtils matOptimize ripples usher_server DESTINATION bin)
else()
install(TARGETS usher matUtils matOptimize ripples DESTINATION bin)
endif()