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DESCRIPTION
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DESCRIPTION
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Package: VaSP
Type: Package
Version: 1.7.2
Title: Quantification and Visualization of Variations of Splicing in Population
Authors@R: c(person("Huihui", "Yu", role = c("aut", "cre"),
email = "[email protected]", comment = c(ORCID = "0000-0003-2725-1937")),
person("Qian", "Du", role="aut",email = "[email protected]",
comment = c(ORCID = '0000-0003-3864-8745')),
person("Chi", "Zhang", role="aut", email="[email protected]",
comment = c(ORCID = '0000-0002-1827-8137')))
Description: Discovery of genome-wide variable alternative splicing events from
short-read RNA-seq data and visualizations of gene splicing information for
publication-quality multi-panel figures in a population. (Warning: The
visualizing function is removed due to the dependent package Sushi
deprecated. If you want to use it, please change back to an older version.)
URL: https://github.com/yuhuihui2011/VaSP
BugReports: https://github.com/yuhuihui2011/VaSP/issues
License: GPL (>= 2.0)
Depends: R (>= 4.0), ballgown
Imports: IRanges, GenomicRanges, S4Vectors, parallel, matrixStats,
GenomicAlignments, GenomeInfoDb, Rsamtools, cluster, stats, graphics, methods
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
biocViews: RNASeq, AlternativeSplicing, DifferentialSplicing, StatisticalMethod,
Visualization, Preprocessing, Clustering, DifferentialExpression, KEGG,
ImmunoOncology
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.1.1