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This is My error and Package ‘biomaRt’ version 2.56.1 cannot be unloaded :
ht <- FeatureHeatmap(
+ srt = pancreas_sub, group.by = "celltype", features = DEGs$gene, feature_split = DEGs$group1,
+ species = "Homo_sapiens", db = c("GO_BP","KEGG"), anno_terms = TRUE,
+ feature_annotation = c("CSPA"), feature_annotation_palcolor = list(c("gold")),
+ height = 5, width = 4
+ )
Warning in FeatureHeatmap(srt = pancreas_sub, group.by = "celltype", features = DEGs$gene, :
The values in the 'counts' slot are non-integer. Set the library size to 1.
[2023-12-02 00:55:42.461781] Start Enrichment
Workers: 6
Species: Homo_sapiens
Loading cached db: GO_BP version:3.17.0 nterm:15960 created:2023-08-23 10:35:32.644541
Loading cached db: KEGG version:Release 108.0+/11-26, Nov 23 nterm:356 created:2023-11-26 22:33:54.616616
Convert ID types for the database: KEGG
Connect to the Ensembl archives...
Using the 103 version of biomart...
Connecting to the biomart...
Searching the dataset hsapiens ...
Connecting to the dataset hsapiens_gene_ensembl ...
Converting the geneIDs...
Failed to collect lazy table.
Caused by error in `db_collect()`:
! Arguments in `...` must be used.
✖ Problematic argument:
• ..1 = Inf
ℹ Did you misspell an argument name?
Get errors when retrieving information from the BioMart database
Retrying...
Failed to collect lazy table.
Caused by error in `db_collect()`:
! Arguments in `...` must be used.
✖ Problematic argument:
• ..1 = Inf
ℹ Did you misspell an argument name?
Get errors when retrieving information from the BioMart database
Retrying...
Failed to collect lazy table.
Caused by error in `db_collect()`:
! Arguments in `...` must be used.
✖ Problematic argument:
• ..1 = Inf
ℹ Did you misspell an argument name?
The text was updated successfully, but these errors were encountered:
This is My error and Package ‘biomaRt’ version 2.56.1 cannot be unloaded :
The text was updated successfully, but these errors were encountered: