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Question about several functions in SCP #227

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Cathearty opened this issue Dec 30, 2023 · 1 comment
Open

Question about several functions in SCP #227

Cathearty opened this issue Dec 30, 2023 · 1 comment

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@Cathearty
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it is a very dramatic and fantastic package that almost rebuilds the whole knowledge system of beginners!
However, there are a few questions I feel uncertain about and want to discuss with the author and colleagues.

  1. Does SCP support cellchat or similar cell-cell communication functions? I'd like to make a whole workflow built by SCP, but I failed to find which function may be suitable for this function.
  2. Does SCP support further analysis based on pseudotime analysis? In many cases, I want to perform further exploration after simply pseudotime analysis, but I failed to find the functions that support analysis such as how gene expression changes with the pseudo-time progress. I know this function is supported by Monocle3 (if it is supported in SlingShot I am not certain) and I can see how genes change from the early stage of differentiation to the terminals.

That's all my questions and it will be greatly helpful if there are replies!

@MInsYang
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Hello, I am not an SCP developer, but based on my experience using it, I would say 1. no. 2. you may refer to the parameters of RunDynamicFeature for more information.

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