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it is a very dramatic and fantastic package that almost rebuilds the whole knowledge system of beginners!
However, there are a few questions I feel uncertain about and want to discuss with the author and colleagues.
Does SCP support cellchat or similar cell-cell communication functions? I'd like to make a whole workflow built by SCP, but I failed to find which function may be suitable for this function.
Does SCP support further analysis based on pseudotime analysis? In many cases, I want to perform further exploration after simply pseudotime analysis, but I failed to find the functions that support analysis such as how gene expression changes with the pseudo-time progress. I know this function is supported by Monocle3 (if it is supported in SlingShot I am not certain) and I can see how genes change from the early stage of differentiation to the terminals.
That's all my questions and it will be greatly helpful if there are replies!
The text was updated successfully, but these errors were encountered:
Hello, I am not an SCP developer, but based on my experience using it, I would say 1. no. 2. you may refer to the parameters of RunDynamicFeature for more information.
it is a very dramatic and fantastic package that almost rebuilds the whole knowledge system of beginners!
However, there are a few questions I feel uncertain about and want to discuss with the author and colleagues.
That's all my questions and it will be greatly helpful if there are replies!
The text was updated successfully, but these errors were encountered: