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关于Seurat版本更新后的使用问题 #229

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kikokhalifa opened this issue Jan 12, 2024 · 2 comments
Open

关于Seurat版本更新后的使用问题 #229

kikokhalifa opened this issue Jan 12, 2024 · 2 comments

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@kikokhalifa
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张老师您好，
我在尝试默认安装SCP时，默认是安装的SeuratV5，而导致无法运行，因此调试后将Seurat降为4.4.0，SeuratObject保持V5，可以运行CellQC，但在进行Standard_SCP时，输出的文件中缺少了“Celltpye”，"SubCelltype"等文件。请问这应该如何解决呢
谢谢。
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@lisch7
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lisch7 commented Feb 15, 2024

我也想知道，SCP什么时候可以兼容Seurat V5

@XiaolongYang-HZAU
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同样的问题，手动降级seurat5以及依赖包非常复杂，且仍然会在一些函数遇到不可预料的bug

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@XiaolongYang-HZAU @lisch7 @kikokhalifa