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Amit-H/README.md

Hi 👋 I’m Amit, a PhD Student @ The University of Oxford & Roche

I’m exploring the gut-liver axis, and I am passionate about biotech, innovation and translational research

I am currently exploring the gut-liver-microbiome axis in healthy ageing in the Powrie Mucosal Immunology Group at the University of Oxford and pRED at Roche. I am exploring the microbe controlled components of enterohepatic circuits, and eventually hope to understand how to change these. I'm using a multiomics approach through RNA and metagenomic sequencing, as well as metagenomic metabolic modelling and basic wet lab techniques.

I'm involved with Nucleate, a non-profit orgnaisation who's mission is to empower the next generation of biotech leaders through education and access to a global network of talent and capital. I've worked in VC and biotech & bioinformatics consultancy, and had a previous career as a scicomm influencer.

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  1. stave stave Public

    Bulk to Single Cell Type Estimation

    R

  2. LatchBio-Automated-SCFiltering LatchBio-Automated-SCFiltering Public

    LatchBio Implementation of Dropkick for automated single cell filtering

    Python 1

  3. MuSiC_Julia MuSiC_Julia Public

    Julia

  4. useful-bioinf-functions useful-bioinf-functions Public

    Quality of life functions that make bioinformatics + computational biology analyses easier

    Shell 1

  5. Mining-for-microbes Mining-for-microbes Public

    Reusing publicly available whole transcriptome data to determine the state of the microbiome at time of sampling.

    1

  6. Malaria-classifier Malaria-classifier Public

    CNN built in Python using Keras to classify parasitised malaria cells

    Jupyter Notebook