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@AnimalGenomicsETH

ETH Animal Genomics group

Github page for the ETH Animal Genomics group
README.md

Animal Genomics group at ETH Zürich

See our group website, or follow our group twitter

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  1. bovine-graphs bovine-graphs Public

    Integrate multiple genome assemblies into a pangenome graph

    Python 31 5

  2. superpangenome_construction superpangenome_construction Public

    Python 12 4

  3. bovine-assembly bovine-assembly Public

    bovine assembly central repo

    Jupyter Notebook 8 1

  4. pangenome_molQTL pangenome_molQTL Public

    Python 4

  5. Reference_assembly_choice Reference_assembly_choice Public

    Repository including scripts and workflows for "Investigating the impact of reference assembly choice on genomic analyses in a cattle breed"

    Jupyter Notebook 1

  6. Low_pass_imputation Low_pass_imputation Public

    Repository including scripts and workflows for "Size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle"

    Python 1 1

Repositories

Showing 10 of 11 repositories
  • RNA_variant_calling Public

    Calling variants from DNA- and RNA-seq

    AnimalGenomicsETH/RNA_variant_calling’s past year of commit activity
    Python 1 0 0 0 Updated Aug 15, 2024
  • pangenome_KIT Public
    AnimalGenomicsETH/pangenome_KIT’s past year of commit activity
    Python 1 0 0 0 Updated Jul 25, 2024
  • BSW_analysis Public
    AnimalGenomicsETH/BSW_analysis’s past year of commit activity
    Python 0 0 0 0 Updated May 31, 2024
  • pangenome_molQTL Public
    AnimalGenomicsETH/pangenome_molQTL’s past year of commit activity
    Python 4 0 0 0 Updated Dec 14, 2023
  • euler_profiles Public Forked from Snakemake-Profiles/lsf

    Snakemake profile for running jobs on an LSF cluster

    AnimalGenomicsETH/euler_profiles’s past year of commit activity
    Python 0 22 2 0 Updated Jul 3, 2023
  • superpangenome_construction Public
    AnimalGenomicsETH/superpangenome_construction’s past year of commit activity
    Python 12 MIT 4 2 0 Updated May 3, 2023
  • .github Public

    Learn more about the work we do

    AnimalGenomicsETH/.github’s past year of commit activity
    0 0 0 0 Updated Apr 28, 2023
  • Low_pass_imputation Public

    Repository including scripts and workflows for "Size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle"

    AnimalGenomicsETH/Low_pass_imputation’s past year of commit activity
    Python 1 1 0 0 Updated Mar 7, 2023
  • bovine-assembly Public

    bovine assembly central repo

    AnimalGenomicsETH/bovine-assembly’s past year of commit activity
    Jupyter Notebook 8 MIT 1 1 0 Updated Jul 29, 2022
  • bovine-graphs Public

    Integrate multiple genome assemblies into a pangenome graph

    AnimalGenomicsETH/bovine-graphs’s past year of commit activity
    Python 31 MIT 5 2 0 Updated Jun 9, 2022
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