Merge pull request #26 from AstraZeneca/dg_readthedocs_migration #109

	name: CI

	on:

	push:
	branches: [ main ]
	pull_request:
	branches: [ main ]

	workflow_dispatch:

	jobs:
	build:
	runs-on: macos-latest
	steps:
	- uses: actions/checkout@v2
	- uses: actions/setup-python@v1
	with:
	python-version: 3.9.17
	- uses: s-weigand/setup-conda@v1
	with:
	activate-conda: true
	python-version: 3.9
	- run: conda --version
	- run: which python
	- name: Run installation.
	run: \|
	conda install -y scipy
	conda install Cython
	pip install codecov
	pip install pytest
	pip install tox
	pip install nbconvert
	pip install markupsafe==2.0.1
	pip install -r requirements.txt
	- name: Run code quality tests
	run: \|
	tox -e flake8
	- name: Run type checking
	run: \|
	tox -e mypy
	- name: Install main package
	run: \|
	pip install -e .[test]
	- name: Run test-suite
	run: \|
	python -m pytest
	- name: Generate coverage report
	if: success()
	run: \|
	pip install coverage
	coverage run -m pytest
	coverage xml
	- name: Upload coverage report to codecov
	uses: codecov/codecov-action@v1
	if: success()
	with:
	file: coverage.xml

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