Skip to content
@BCCDC-PHL

BC Centre for Disease Control Public Health Laboratory

The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.

Pinned Loading

  1. ncov2019-artic-nf ncov2019-artic-nf Public

    Forked from connor-lab/ncov2019-artic-nf

    A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

    Nextflow 3 1

  2. illumina-uploader illumina-uploader Public

    Watch for new files in Illumina sequencer and upload to remote server

    Python 3 1

  3. mpxv-artic-nf mpxv-artic-nf Public

    Python 2 1

  4. covid-qc covid-qc Public

    Static site for displaying COVID-19 sequencing quality control data

    Clojure 4

Repositories

Showing 10 of 120 repositories
  • amplicon-consensus Public
    BCCDC-PHL/amplicon-consensus’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Sep 3, 2024
  • mpxv-artic-nf Public
    BCCDC-PHL/mpxv-artic-nf’s past year of commit activity
    Python 2 1 0 0 Updated Sep 3, 2024
  • alignment-variants Public

    Pipeline to perform alignment & variant calling on whole-genome sequence data

    BCCDC-PHL/alignment-variants’s past year of commit activity
    Nextflow 0 0 0 0 Updated Aug 31, 2024
  • artic-mpxv2022 Public
    BCCDC-PHL/artic-mpxv2022’s past year of commit activity
    0 0 0 0 Updated Aug 30, 2024
  • auto-ncov Public

    Automated genomic analysis of SARS-CoV-2 sequence data

    BCCDC-PHL/auto-ncov’s past year of commit activity
    Python 1 0 3 0 Updated Aug 30, 2024
  • auspice-docker Public
    BCCDC-PHL/auspice-docker’s past year of commit activity
    Shell 0 0 0 0 Updated Aug 26, 2024
  • auspice Public Forked from nextstrain/auspice

    Web app for visualizing pathogen evolution

    BCCDC-PHL/auspice’s past year of commit activity
    JavaScript 0 AGPL-3.0 164 0 0 Updated Aug 26, 2024
  • fluviewer-nf Public

    Nextflow pipeline for influenza A whole genome sequence analysis

    BCCDC-PHL/fluviewer-nf’s past year of commit activity
    Nextflow 0 0 4 2 Updated Aug 23, 2024
  • cpo-results-collector Public
    BCCDC-PHL/cpo-results-collector’s past year of commit activity
    Python 0 0 3 0 Updated Aug 21, 2024
  • nextclade-nf Public

    Pipeline for running nextclade

    BCCDC-PHL/nextclade-nf’s past year of commit activity
    Nextflow 0 0 0 0 Updated Aug 14, 2024
View all repositories

Top languages

Loading…