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@Clinical-Genomics-Lund

Clinical Genomics Lund

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  1. gens gens Public

    JavaScript 12 5

  2. nextflow_wgs nextflow_wgs Public

    Perl 5 5

  3. nextflow_microwgs nextflow_microwgs Public

    Perl 2 1

  4. nextflow_tumwgs nextflow_tumwgs Public

    Perl 2 2

  5. SomaticPanelPipeline SomaticPanelPipeline Public

    Perl 2

Repositories

Showing 10 of 50 repositories
  • nextflow_ST_rnaseqfus Public

    A rnaseq fussion detection assay at CMD

    Clinical-Genomics-Lund/nextflow_ST_rnaseqfus’s past year of commit activity
    Perl 0 0 0 0 Updated Sep 6, 2024
  • bonsai Public

    Visualize and analyze resistance and outbreak of bacterial pathogen

    Clinical-Genomics-Lund/bonsai’s past year of commit activity
    HTML 4 1 26 1 Updated Sep 6, 2024
  • bonsai-prp Public

    Pipeline output Processing Program for Bonsai

    Clinical-Genomics-Lund/bonsai-prp’s past year of commit activity
    Python 0 GPL-3.0 0 3 0 Updated Sep 5, 2024
  • Pipeline-validation-tools Public

    Set of tools for assisting verifications and validations.

    Clinical-Genomics-Lund/Pipeline-validation-tools’s past year of commit activity
    R 0 0 0 0 Updated Sep 4, 2024
  • coyote_blueprinted Public
    Clinical-Genomics-Lund/coyote_blueprinted’s past year of commit activity
    Python 0 0 0 0 Updated Sep 4, 2024
  • nextflow_wgs Public
    Clinical-Genomics-Lund/nextflow_wgs’s past year of commit activity
    Perl 5 5 66 (4 issues need help) 5 Updated Sep 3, 2024
  • SomaticPanelPipeline Public
    Clinical-Genomics-Lund/SomaticPanelPipeline’s past year of commit activity
    Perl 0 2 17 (1 issue needs help) 3 Updated Aug 28, 2024
  • qc_sentieon Public

    Script to generate json with relevant QC-data for WGS and panels

    Clinical-Genomics-Lund/qc_sentieon’s past year of commit activity
    Perl 0 0 0 0 Updated Aug 19, 2024
  • jasentool Public
    Clinical-Genomics-Lund/jasentool’s past year of commit activity
    Python 0 GPL-3.0 0 2 0 Updated Jul 30, 2024
  • PGxModule Public

    PGxModule is an advanced Nextflow DSL2 workflow, designed to seamlessly integrate into your genomics pipeline. It empowers you to generate sample-specific reports with clinical guidelines, leveraging state-of-the-art variant detection in Genomic Medicine Sweden sequencing panels.

    Clinical-Genomics-Lund/PGxModule’s past year of commit activity
    Nextflow 0 GPL-3.0 0 6 (1 issue needs help) 0 Updated Jul 25, 2024
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