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@DCAN-Labs

Developmental Cognition and Neuroimaging Labs

Our lab uses MRI to examine typical and atypical brain development. Our research is examining children with ASD as well as children and adults with ADHD.

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  1. BWAS BWAS Public

    Code to run Brain Wide Association Studies to derive PolyNeuro Risk Scores

    MATLAB 1 1

  2. biceps biceps Public

    Brain Imaging Connectivity Extraction Program Solution

    C

  3. BIBSnet BIBSnet Public

    This BIDS App provides the utility of creating a nnU-Net anatomical MRI segmentation and mask with a infant brain trained model for the purposes of circumventing JLF within Nibabies.

    Python 3 6

  4. CABINET CABINET Public

    CABINET is a utility that standardizes subsequent container execution. Emphasizing reproducibility, users can share JSONs to exactly replicate how containerized processes follow each other.

    Python 1 1

  5. abcd-hcp-pipeline abcd-hcp-pipeline Public

    bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

    Python 47 19

  6. infant-abcd-bids-pipeline infant-abcd-bids-pipeline Public

    Human infant pipeline, based on abcd-hcp-pipeline, to process fMRI data.

    Python 8 4

Repositories

Showing 10 of 116 repositories
  • internal-tools Public

    Tools written by DCAN Labs and used, in common, by the DCAN pipelines.

    DCAN-Labs/internal-tools’s past year of commit activity
    Dockerfile 1 BSD-3-Clause 0 0 0 Updated Jul 20, 2024
  • external-software Public

    Tools needed for the DCAN Labs pipelines that we didn't write.

    DCAN-Labs/external-software’s past year of commit activity
    Dockerfile 1 BSD-3-Clause 1 0 0 Updated Jul 20, 2024
  • abcd-hcp-pipeline Public

    bids application for processing functional MRI data, robust to scanner, acquisition and age variability.

    DCAN-Labs/abcd-hcp-pipeline’s past year of commit activity
    Python 47 BSD-3-Clause 19 22 1 Updated Jul 19, 2024
  • dcan-nn-unet Public

    Utility programs created for using nn-UNet on ABCD data.

    DCAN-Labs/dcan-nn-unet’s past year of commit activity
    Python 2 BSD-3-Clause 1 0 0 Updated Jul 18, 2024
  • loes-scoring-2 Public

    Code for automated Loes scoring.

    DCAN-Labs/loes-scoring-2’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Jul 18, 2024
  • DCAN-Labs/SLURM_wrappers’s past year of commit activity
    Shell 0 GPL-3.0 0 4 0 Updated Jul 15, 2024
  • SynthSeg Public Forked from BBillot/SynthSeg

    Contrast-agnostic segmentation of MRI scans

    DCAN-Labs/SynthSeg’s past year of commit activity
    Python 1 86 8 0 Updated Jul 15, 2024
  • bobsrepository Public

    some default

    DCAN-Labs/bobsrepository’s past year of commit activity
    0 0 0 0 Updated Jul 12, 2024
  • abcd-dicom2bids Public

    For selectively downloading ABCD data QC'ed as good by the DAIC, converting it to BIDS standard input data, selecting the best pair of spin echo field maps, and correcting the sidecar JSON files to meet BIDS Validator spec.

    DCAN-Labs/abcd-dicom2bids’s past year of commit activity
    Python 19 BSD-3-Clause 20 5 2 Updated Jul 12, 2024
  • BrainSwipes Public

    A crowdsource quality assurance application for use with neuroimaging datasets.

    DCAN-Labs/BrainSwipes’s past year of commit activity
    Vue 0 Apache-2.0 1 0 0 Updated Jul 11, 2024