Fails for anat only data when --ignore func flag isn't specified

[audreymhoughton]

If you have data that contains some subjects with functional data and some without, you cannot submit one run command for the pipeline. You have submit one command for the subjects with functional data and one for the subjects without that includes the --ignore func flag.

If the pipeline could check what is in the subject directory and default to --ignore func for subjects without functional data, that would be ideal.

[LuciMoore]

@audreymhoughton is this still a problem?

[audreymhoughton]

@LuciMoore it was never fixed to my knowledge