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@DeepLabCut

DeepLabCut

DeepLabCut, a software package for animal pose estimation. Created by the A. and M.W. Mathis Labs

Welcome to the DeepLabCut Organization! 👋

🙋‍♀️ DeepLabCut™ is an efficient method for 2D and 3D markerless pose estimation based on transfer learning with deep neural networks.

We also have several key code repositories that may be of interest:

  • DLC-Live! & DLC-Live! GUI -- export your trained DeepLabCut model and run it for live analysis. Consider using our easy GUI to do so.
  • DLCUtils -- this repo hosts some code and key links to helper packages that input the outputs of DeepLabCut for downstream analysis.
  • DLC Workshop & Educational Materials -- learn about how to use and develop with DeepLabCut!
  • DLC2Kinematics -- use this code to load DeepLabCut (H5) files for movement analysis, dev. by MW Mathis Lab.
  • CEBRA -- use this code to load DeepLabCut (H5) files for advnced nonlinear embedding analysis and joint modeling, dev. by MW Mathis Lab.

🌈 Contribution guidelines to this project can be found here!

🍿 Find more resources, our papers, and examples on the main website!

🧙 Check out the repos below to find helper code, additional tools, and more!

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  1. DeepLabCut DeepLabCut Public

    Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

    Python 4.4k 1.6k

  2. DeepLabCut-live DeepLabCut-live Public

    SDK for running DeepLabCut on a live video stream

    Python 178 50

  3. DeepLabCut-Workshop-Materials DeepLabCut-Workshop-Materials Public

    Workshop material for using DeepLabCut

    Jupyter Notebook 137 37

  4. DLCutils DLCutils Public

    Various scripts to support deeplabcut and what to do afterwards!

    Jupyter Notebook 138 64

  5. DeepLabCut-live-GUI DeepLabCut-live-GUI Public

    GUI to run DeepLabCut on live video feed

    Python 52 20

  6. Primer-MotionCapture Primer-MotionCapture Public

    A Primer on Motion Capture with Deep Learning:Principles, Pitfalls and Perspectives

    Jupyter Notebook 22 6

Repositories

Showing 10 of 21 repositories
  • DeepLabCut Public

    Official implementation of DeepLabCut: Markerless pose estimation of user-defined features with deep learning for all animals incl. humans

    DeepLabCut/DeepLabCut’s past year of commit activity
    Python 4,411 LGPL-3.0 1,621 26 7 Updated Jul 2, 2024
  • DLC2NWB Public

    Utilities to convert DeepLabCut (DLC), output to/from Neurodata Without Borders (NWB) format.

    DeepLabCut/DLC2NWB’s past year of commit activity
    Python 13 MIT 7 5 1 Updated Jun 19, 2024
  • napari-deeplabcut Public

    a napari plugin for labeling and refining keypoint data within DeepLabCut projects

    DeepLabCut/napari-deeplabcut’s past year of commit activity
    Python 50 LGPL-3.0 22 8 (3 issues need help) 5 Updated Jun 12, 2024
  • DeepLabCut/benchmark’s past year of commit activity
    Python 1 1 1 2 Updated Mar 1, 2024
  • DeepLabCut-live Public

    SDK for running DeepLabCut on a live video stream

    DeepLabCut/DeepLabCut-live’s past year of commit activity
  • DeepLabCut-live-pytorch Public

    [WIP] Brand new DLC-live introduced with DLC3. All inference and training code in PyTorch.

    DeepLabCut/DeepLabCut-live-pytorch’s past year of commit activity
    6 AGPL-3.0 0 0 0 Updated Feb 4, 2024
  • DLClibrary Public

    DLClibrary is a lightweight library supporting universal functions for the DeepLabCut ecosystem.

    DeepLabCut/DLClibrary’s past year of commit activity
    Python 4 LGPL-3.0 4 1 0 Updated Jan 31, 2024
  • DLCutils Public

    Various scripts to support deeplabcut and what to do afterwards!

    DeepLabCut/DLCutils’s past year of commit activity
    Jupyter Notebook 138 64 2 1 Updated Oct 26, 2023
  • DeepLabCut-Workshop-Materials Public

    Workshop material for using DeepLabCut

    DeepLabCut/DeepLabCut-Workshop-Materials’s past year of commit activity
    Jupyter Notebook 137 37 0 0 Updated Oct 11, 2023
  • DeepLabCut/UnitTestData’s past year of commit activity
    0 GPL-3.0 1 0 0 Updated Sep 11, 2023