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@EUCANCan

EUCANCan

European-Canadian Cancer Network

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  1. oncoliner oncoliner Public

    A comprehensive benchmarking platform for monitoring, improving and harmonizing somatic variant calling across genomic oncology centers.

    Python 4

  2. variant-extractor variant-extractor Public

    Deterministic and standard extractor of SNVs, indels and structural variants (SVs) from VCF files.

    Python 6 1

  3. prepy-wrapper prepy-wrapper Public

    Wrapper for pre.py from Illumina's hap.py package. It is used to preprocess VCF files in order to normalize SNVs and indels for downstream analysis.

    Python 1

  4. variant-callers variant-callers Public

    Scripts and containers to run the variant callers originally used in ONCOLINER

    Shell 1

Repositories

Showing 5 of 5 repositories
  • oncoliner Public

    A comprehensive benchmarking platform for monitoring, improving and harmonizing somatic variant calling across genomic oncology centers.

    EUCANCan/oncoliner’s past year of commit activity
    Python 4 0 0 0 Updated Jul 24, 2024
  • variant-extractor Public

    Deterministic and standard extractor of SNVs, indels and structural variants (SVs) from VCF files.

    EUCANCan/variant-extractor’s past year of commit activity
    Python 6 MIT 1 0 0 Updated Jul 17, 2024
  • variant-callers Public

    Scripts and containers to run the variant callers originally used in ONCOLINER

    EUCANCan/variant-callers’s past year of commit activity
    Shell 1 BSD-3-Clause 0 0 0 Updated Dec 4, 2023
  • prepy-wrapper Public

    Wrapper for pre.py from Illumina's hap.py package. It is used to preprocess VCF files in order to normalize SNVs and indels for downstream analysis.

    EUCANCan/prepy-wrapper’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Oct 17, 2023
  • bioinfo-pipelines Public

    Bioinformatics pipelines to analyse whole-genome / whole exome sequencing data for tumors

    EUCANCan/bioinfo-pipelines’s past year of commit activity
    Dockerfile 1 GPL-3.0 2 0 0 Updated Oct 7, 2020

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