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@HighlanderLab

HighlanderLab

Software for the management and improvement of populations using data science, genetics, and breeding

Popular repositories

  1. jbancic_alphasimr_plants jbancic_alphasimr_plants Public

    Plant breeding simulations with AlphaSimR

    HTML 9 7

  2. jbancic_GEIsim jbancic_GEIsim Public

    This repository contains examples of code for simulating genotype by environment interaction

    R 4 1

  3. tree_seq_pipeline tree_seq_pipeline Public

    Pipeline to infer tree sequences with different datasets

    Python 3 7

  4. gmafrafortuna_mtdna_breed gmafrafortuna_mtdna_breed Public

    Accounting for nuclear - and mito-genome in dairy cattle breeding: a simulation study

    R 2

  5. nlubanga_tea_breeding_gs nlubanga_tea_breeding_gs Public archive

    Simulation of tea breeding programmes using genomic selection

    R 2 1

  6. llara_additive_genVar llara_additive_genVar Public archive

    Temporal and genomic analysis of additive genetic variance in breeding programmes

    R 1

Repositories

Showing 10 of 51 repositories
  • SIMplyBee Public

    SIMplyBee R package extends AlphaSimR for simulating honeybee populations and breeding programmes

    HighlanderLab/SIMplyBee’s past year of commit activity
    R 0 5 70 1 Updated Aug 29, 2024
  • EUCARPIA2025BiometricsPlantBreeding Public

    This is a repository hosting public information about the EUCARPIA 2025 Biometrics in Plant Breeding in Edinburgh 17-19th September 2025 + Satellite workshop 15-16th September

    HighlanderLab/EUCARPIA2025BiometricsPlantBreeding’s past year of commit activity
    1 0 0 0 Updated Aug 15, 2024
  • jbancic_alphasimr_plants Public

    Plant breeding simulations with AlphaSimR

    HighlanderLab/jbancic_alphasimr_plants’s past year of commit activity
    HTML 9 7 3 0 Updated Aug 1, 2024
  • tree_seq_pipeline Public

    Pipeline to infer tree sequences with different datasets

    HighlanderLab/tree_seq_pipeline’s past year of commit activity
    Python 3 MIT 7 15 1 Updated Jul 26, 2024
  • AlphaPart Public Forked from AlphaGenes/AlphaPart

    AlphaPart implements a method for partitioning genetic trends to quantify the sources of genetic gain in breeding programmes

    HighlanderLab/AlphaPart’s past year of commit activity
    R 0 3 0 0 Updated Jul 15, 2024
  • gdejong_gca_with_dominance_models Public archive Forked from guilhermedejong/simulation_genomic_prediction_models

    Simulation scripts from the study of Guilherme de Jong about genomic prediction with additive and dominance effects in maize breeding

    HighlanderLab/gdejong_gca_with_dominance_models’s past year of commit activity
    R 1 1 0 0 Updated Jul 15, 2024
  • jbancic_GEIsim Public

    This repository contains examples of code for simulating genotype by environment interaction

    HighlanderLab/jbancic_GEIsim’s past year of commit activity
    R 4 1 0 0 Updated Jul 15, 2024
  • gmafrafortuna_mtdna_breed Public

    Accounting for nuclear - and mito-genome in dairy cattle breeding: a simulation study

    HighlanderLab/gmafrafortuna_mtdna_breed’s past year of commit activity
    R 2 0 0 0 Updated Jul 11, 2024
  • lstrachan_honeybee_relatedness Public

    This repository contain R scripts that demonstrates the principles of expected and realised genetic relatedness among individual honeybees using SIMplyBee.

    HighlanderLab/lstrachan_honeybee_relatedness’s past year of commit activity
    R 0 0 0 0 Updated May 20, 2024
  • AlphaSimR Public Forked from gaynorr/AlphaSimR

    R package for breeding program simulations

    HighlanderLab/AlphaSimR’s past year of commit activity
    R 0 18 0 0 Updated May 4, 2024
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