Update test_cli.py

-- flepi_path ../../ addition to the end of the CL command
HopkinsIDD · Jul 2, 2024 · 4bee72b · 4bee72b
1 parent 0b6f8a0
commit 4bee72b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/examples/test_cli.py b/examples/test_cli.py
@@ -53,7 +53,7 @@ def test_Rscript_inference_main():
   # test the same as above using an R script, instead of CliRunner use a command line
   os.chdir(os.path.dirname(__file__) + "/tutorial_two_subpops")
 
-  returncode, stdout, stderr = command_safe_run("--FLEPI_PATH ../../ Rscript ../../flepimop/main_scripts/inference_main.R -c config_sample_2pop_inference.yml -n 1",
+  returncode, stdout, stderr = command_safe_run("Rscript ../../flepimop/main_scripts/inference_main.R -c config_sample_2pop_inference.yml -n 1 --flepi_path ../../",
                                                 command_name="testing Rscript",
                                                 fail_on_fail=False)
   assert returncode == 0