Merge branch 'main' into main_postprocess_update

HopkinsIDD · Jul 11, 2024 · a02685f · a02685f
2 parents 39439f1 + 4485458
commit a02685f
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Showing 10 changed files with 1,273 additions and 99 deletions.
diff --git a/..._library/config_sample_2pop_inference.yml → ..._subpops/config_sample_2pop_inference.yml b/..._library/config_sample_2pop_inference.yml → ..._subpops/config_sample_2pop_inference.yml
@@ -47,7 +47,7 @@ seir:
 
 seir_modifiers:
   scenarios:
-    - Ro_all
+    - inference
   modifiers:
     Ro_mod: # assume same for all subpopulations
       method: SinglePeriodModifier
@@ -86,7 +86,7 @@ seir_modifiers:
         sd: 0.025
         a: -0.1
         b: 0.1
-    Ro_all:
+    inference:
       method: StackedModifier
       modifiers: ["Ro_mod","Ro_lockdown"]
 
@@ -122,10 +122,10 @@ outcomes:
 
 outcome_modifiers:
   scenarios:
-    - test_limits
+    - all
   modifiers:
     # assume that due to limitations in testing, initially the case detection probability was lower
-    test_limits:
+    all:
       method: SinglePeriodModifier
       parameter: incidCase
       subpop: "all"