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Add version numbers in VCF output #20
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Currently only nextflow version number is accessible with Could we have more environment variables with these informations @pditommaso (pipeline version, docker image ID, eventually the full command line)? |
It could also be useful to obtain the versions of each tool used (in case people don't use docker, and even with docker for easier reference). We could add a process dedicated to that doing: perl --version
samtools --version
bedtools --version
Rscript --version And writing all these somewhere in the VCF. |
It is not clear how do you want these environment variables. Let's continue the discussion in the nextflow mailing list / gitter / github repo. |
Linked to #41: the log file could be a better place for all details, maybe simply put the pipeline version number in the VCF. |
Note that it is now also available for vcflib: vcflib/vcflib#102
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It would be good to write at least the pipeline version, nextflow version and the docker container version.
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