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It should be easy to simply take the shell portions from nextflow script. Of course we just ignore the first one splitting the bed file. The difficult part could be to parse arguments (and to give them the same names) and to make sure we keep it up-to-date when we update the nextflow script. For arguments parsing, have a look at https://gist.github.com/jehiah/855086
The text was updated successfully, but these errors were encountered:
It should be easy to simply take the shell portions from nextflow script. Of course we just ignore the first one splitting the bed file. The difficult part could be to parse arguments (and to give them the same names) and to make sure we keep it up-to-date when we update the nextflow script. For arguments parsing, have a look at https://gist.github.com/jehiah/855086
The text was updated successfully, but these errors were encountered: