This is all the code I used for mitometer analysis.
Here is how to use it:
- Open Fiji and open all the videos you want to analyze.
- Run the Fiji macro named "saveproc.ijm", save the outputs to the "newtf" folder.
- In the MitometerApp folder, right click GUI2.mlapp and select edit.
- Go to code view, locate line 1996 and change "C:/Users/Ian/Desktop/old_desktop/mito/mitometrics/out" to the location of your "out" folder.
- Save and open GUI2.mlapp, select "Start 2D", and select all the files you want to analyze.
- After that is done, the raw results will be in the "out" folder.
- Open the mitometrics directory and run the python script "dataprocessing.py", this will generate human readable results in a results folder.