Skip to content
@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

Popular repositories

  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 74 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 46 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 32 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 264 repositories
  • neuronbridge-precompute Public

    Utilities for indexing and transferring of NeuronBridge-related files

    JaneliaSciComp/neuronbridge-precompute’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Sep 4, 2024
  • colormipsearch Public

    Distributed Color Depth MIP Search

    JaneliaSciComp/colormipsearch’s past year of commit activity
    Java 0 BSD-3-Clause 1 0 1 Updated Sep 4, 2024
  • SongExplorer Public

    deep learning for acoustic signals

    JaneliaSciComp/SongExplorer’s past year of commit activity
    Python 22 BSD-3-Clause 5 5 1 Updated Sep 4, 2024
  • dis_qc Public

    Exploration and QC of the Data and Information Services (DIS) publication database.

    JaneliaSciComp/dis_qc’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Sep 3, 2024
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 0 BSD-3-Clause 0 24 0 Updated Sep 3, 2024
  • PyWaveSurfer Public

    PyWaveSurfer is a Python package for reading WaveSurfer data files in Python.

    JaneliaSciComp/PyWaveSurfer’s past year of commit activity
    Python 9 6 1 7 Updated Sep 3, 2024
  • x2s3 Public

    S3 Proxy

    JaneliaSciComp/x2s3’s past year of commit activity
    Python 1 0 0 1 Updated Sep 3, 2024
  • pydantic-ome-ngff Public

    Pydantic models for OME-NGFF

    JaneliaSciComp/pydantic-ome-ngff’s past year of commit activity
    Python 20 BSD-3-Clause 3 6 1 Updated Sep 2, 2024
  • janelia-unity-toolkit Public

    Packages for the Unity game engine, emphasizing animal studies in VR.

    JaneliaSciComp/janelia-unity-toolkit’s past year of commit activity
    C# 15 9 5 2 Updated Sep 1, 2024
  • zarrcade Public
    JaneliaSciComp/zarrcade’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 0 0 0 Updated Aug 31, 2024
View all repositories