This repository contains the benchmarking results between FdeSolver.jl, FractionalDiffEq.jl and MATLAB solvers.
The benchmarking scripts are stored in the src directory and include the following cases:
- Single dimension
- Multiple dimensions
- Random parameters
- ...
To perform one or multiple benchmarks, use the run_benchmark.jl. Data files are generated and saved in the raw subdirectory of the data directory.
Preprocessed data used to plot the figures are available in the data directory, whereas raw data from the 6 benchmarks are found in the raw subdirectory.
Benchmarking plots can be generated by running the plot_benchmarking_results.jl script and are saved in the results/benchmarking subdirectory.
Microbial community simulation is performed by running the run_community_simulation.jl script and plots are saved in the results/community_simulation subdirectory.
Covid-19 transmission fitting is performed by running the run_covid_fitting.jl script and plots are saved in the results/covid_fitting subdirectoy.