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Graph node labeling and traversal update
bug
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dependencies
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documentation
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enhancement
New feature or request
#153
opened Aug 12, 2024 by
MatthewRalston
v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
Kolmogorov complexity
bug
Something isn't working
documentation
Improvements or additions to documentation
invalid
This doesn't seem right
Notes on mouse ibd
documentation
Improvements or additions to documentation
duplicate
This issue or pull request already exists
invalid
This doesn't seem right
Profile recomposition problem
bug
Something isn't working
enhancement
New feature or request
help wanted
Extra attention is needed
invalid
This doesn't seem right
wontfix
This will not be worked on
Quarto template an app. note
dependencies
Pull requests that update a dependency file
documentation
Improvements or additions to documentation
duplicate
This issue or pull request already exists
enhancement
New feature or request
invalid
This doesn't seem right
question
Further information is requested
wontfix
This will not be worked on
#149
opened Aug 4, 2024 by
MatthewRalston
v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
.kdbg format and variants
bug
Something isn't working
documentation
Improvements or additions to documentation
enhancement
New feature or request
good first issue
Good for newcomers
help wanted
Extra attention is needed
invalid
This doesn't seem right
question
Further information is requested
wontfix
This will not be worked on
#143
opened Jul 14, 2024 by
MatthewRalston
v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
Expectation functions
bug
Something isn't working
documentation
Improvements or additions to documentation
enhancement
New feature or request
question
Further information is requested
#142
opened Jul 13, 2024 by
MatthewRalston
v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
D2 metrics
bug
Something isn't working
dependencies
Pull requests that update a dependency file
documentation
Improvements or additions to documentation
duplicate
This issue or pull request already exists
enhancement
New feature or request
question
Further information is requested
#141
opened Jul 13, 2024 by
MatthewRalston
v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
Tetranucleotide bias and Karlin delta
bug
Something isn't working
documentation
Improvements or additions to documentation
enhancement
New feature or request
question
Further information is requested
wontfix
This will not be worked on
#140
opened Jul 13, 2024 by
MatthewRalston
v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
README 2.0
enhancement
New feature or request
good first issue
Good for newcomers
help wanted
Extra attention is needed
invalid
This doesn't seem right
wontfix
This will not be worked on
Kmer.shred always returns sparse kmer_id/count array
documentation
Improvements or additions to documentation
stderr logging and interface cleanup
bug
Something isn't working
dependencies
Pull requests that update a dependency file
documentation
Improvements or additions to documentation
enhancement
New feature or request
question
Further information is requested
vsearch conda package
dependencies
Pull requests that update a dependency file
documentation
Improvements or additions to documentation
enhancement
New feature or request
Expanded row metadata for graph format
dependencies
Pull requests that update a dependency file
documentation
Improvements or additions to documentation
duplicate
This issue or pull request already exists
enhancement
New feature or request
good first issue
Good for newcomers
invalid
This doesn't seem right
still no dl
bug
Something isn't working
duplicate
This issue or pull request already exists
help wanted
Extra attention is needed
invalid
This doesn't seem right
Assert subsequent shredded kmers are neighborly, skip if fails (fastq centered)
bug
Something isn't working
dependencies
Pull requests that update a dependency file
documentation
Improvements or additions to documentation
duplicate
This issue or pull request already exists
enhancement
New feature or request
good first issue
Good for newcomers
question
Further information is requested
#123
opened Mar 5, 2024 by
MatthewRalston
Maybe take a walk?
bug
Something isn't working
dependencies
Pull requests that update a dependency file
documentation
Improvements or additions to documentation
enhancement
New feature or request
good first issue
Good for newcomers
help wanted
Extra attention is needed
question
Further information is requested
wontfix
This will not be worked on
#122
opened Feb 20, 2024 by
MatthewRalston
v0.8 D2, node, edge, path formats, node/edge labeling, tetranucleotides
__init__.py --all-metadata has print statement when not --quiet doesn print to stderr the metadata for debugging.
bug
Something isn't working
invalid
This doesn't seem right
question
Further information is requested
wontfix
This will not be worked on
__init__.py has duplicate storage of kmerid [smell]
bug
Something isn't working
enhancement
New feature or request
good first issue
Good for newcomers
invalid
This doesn't seem right
wontfix
This will not be worked on
kmerdb profile sort order returns improperly sorted col2, col3
bug
Something isn't working
good first issue
Good for newcomers
invalid
This doesn't seem right
Fixing documentation
bug
Something isn't working
documentation
Improvements or additions to documentation
invalid
This doesn't seem right
Not ready for dls
enhancement
New feature or request
good first issue
Good for newcomers
help wanted
Extra attention is needed
invalid
This doesn't seem right
question
Further information is requested
wontfix
This will not be worked on
No module named kmerdb in the bin script from pyproject.toml's entry_point.
bug
Something isn't working
dependencies
Pull requests that update a dependency file
documentation
Improvements or additions to documentation
good first issue
Good for newcomers
help wanted
Extra attention is needed
invalid
This doesn't seem right
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