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On the structural connectivity of large-scale models of brain networks (Giacopelli et al 2021)
ModelDBRepository/266506
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mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} </style> <![endif]--><!--[if gte mso 9]><xml> <o:shapedefaults v:ext="edit" spidmax="1026"/> </xml><![endif]--><!--[if gte mso 9]><xml> <o:shapelayout v:ext="edit"> <o:idmap v:ext="edit" data="1"/> </o:shapelayout></xml><![endif]--> </head> <body lang=EN-US link="#0563C1" vlink="#954F72" style='tab-interval:.5in'> <div class=WordSection1> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'>Model files from the paper</p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><o:p> </o:p></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><b style='mso-bidi-font-weight:normal'>"On the structural connectivity of large-scale models of brain networks." <o:p></o:p></b></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><o:p> </o:p></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><span lang=IT style='mso-ansi-language:IT'>by Giuseppe Giacopelli, Domenico Tegolo, Emiliano Spera and Michele Migliore.</span></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><o:p> </o:p></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><i>Scientific Report,</i> 2021.</p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><o:p> </o:p></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'>Usage:</p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><o:p> </o:p></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'>From <span class=SpellE>Python 3</span> launch the sim.py file in every folder.</p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'>The code reproduces qualitatively the raster plots in figures 3A, 3B and 3C. <br> The precise reconstruction of the figures is constrained by the randomness of <br> network construction and NEST noise generators.</p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><o:p> </o:p></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><span style='mso-no-proof:yes'><!--[if gte vml 1]><v:shapetype id="_x0000_t75" coordsize="21600,21600" o:spt="75" o:preferrelative="t" path="m@4@5l@4@11@9@11@9@5xe" filled="f" stroked="f"> <v:stroke joinstyle="miter"/> <v:formulas> <v:f eqn="if lineDrawn pixelLineWidth 0"/> <v:f eqn="sum @0 1 0"/> <v:f eqn="sum 0 0 @1"/> <v:f eqn="prod @2 1 2"/> <v:f eqn="prod @3 21600 pixelWidth"/> <v:f eqn="prod @3 21600 pixelHeight"/> <v:f eqn="sum @0 0 1"/> <v:f eqn="prod @6 1 2"/> <v:f eqn="prod @7 21600 pixelWidth"/> <v:f eqn="sum @8 21600 0"/> <v:f eqn="prod @7 21600 pixelHeight"/> <v:f eqn="sum @10 21600 0"/> </v:formulas> <v:path o:extrusionok="f" gradientshapeok="t" o:connecttype="rect"/> <o:lock v:ext="edit" aspectratio="t"/> </v:shapetype><v:shape id="Immagine_x0020_10" o:spid="_x0000_i1025" type="#_x0000_t75" style='width:278pt;height:138pt;visibility:visible;mso-wrap-style:square'> <v:imagedata src="readme_file/image001.png" o:title=""/> </v:shape><![endif]--> <![if !vml]><img width=320 height=240 src="readme_file/Brunel.png" v:shapes="Immagine_x0020_10"><![endif]></span></p><br> <![if !vml]><img width=320 height=240 src="readme_file/Diesmann.png" v:shapes="Immagine_x0020_10"><![endif]></span></p><br> <![if !vml]><img width=320 height=240 src="readme_file/Markram.png" v:shapes="Immagine_x0020_10"><![endif]></span></p><br> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><o:p> </o:p></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'>Questions on how to use this model <span class=GramE>should be directed</span> to <a href="mailto:[email protected]">[email protected]</a></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><o:p> </o:p></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'>A Web Application based on this work is available at <a href="https://www.humanbrainproject.eu/en/brain-simulation/live-papers/" target="_blank">https://www.humanbrainproject.eu/en/brain-simulation/live-papers/</a></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'>The data used in the paper was downloaded from <a href="https://bbpteam.epfl.ch/nmc-portal/downloads.html" target="_blank">https://bbpteam.epfl.ch/nmc-portal/downloads.html</a>,<br> <a href="https://senselab.med.yale.edu/ModelDB/showmodel?model=244261#tabs-1" target="_blank">https://senselab.med.yale.edu/ModelDB/showmodel?model=244261#tabs-1</a> and <br> <a href="https://www.nest-simulator.org/py_sample/brunel_alpha_nest/" target="_blank">https://www.nest-simulator.org/py_sample/brunel_alpha_nest/</a>. </b></span> <b style='mso-bidi-font-weight:normal'><o:p></o:p></b></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><o:p> </o:p></p> <p class=MsoNormal style='margin-bottom:0in;margin-bottom:.0001pt;line-height: normal'><o:p> </o:p></p> </div> </body> </html>
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On the structural connectivity of large-scale models of brain networks (Giacopelli et al 2021)
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