Fix evaluation from previous automatic migration

Tested with nix-env -qaf .

The res -> super changes are necessary because res points to the result
of the current overlay, but some of the packages were moved to the
previous overlay, which can be accessed with super. This is a
fundamental problem to be fixed, see #55061
and related issues

The schleuder change is necessary because the ./default.nix file
referenced ./., but there's also another package in ./bin. The tool
couldn't move the gemfiles in ./. because

The schleuder change is necessary because the tool isn't smart enough
and this is a special case of the default.nix reading gemfiles from a
./. reference and there being both schleuder in
pkgs/tools/security/schleuder and schleuder-cli in
pkgs/tools/security/schleuder/cli

pkgs/top-level/all-packages.nix

@@ -9939,9 +9939,9 @@ with pkgs;
     inherit (darwin.apple_sdk.frameworks) Cocoa AGL OpenGL;
   };
 
-  pcre16 = res.pcre.override { variant = "pcre16"; };
+  pcre16 = super.pcre.override { variant = "pcre16"; };
   # pcre32 seems unused
-  pcre-cpp = res.pcre.override { variant = "cpp"; };
+  pcre-cpp = super.pcre.override { variant = "cpp"; };
 
   inherit (callPackage ../development/libraries/physfs {
     inherit (darwin.apple_sdk.frameworks) Foundation;
@@ -12656,7 +12656,7 @@ with pkgs;
 
   espeak-classic = callPackage ../applications/audio/espeak { };
 
-  espeak = res.espeak-ng;
+  espeak = super.espeak-ng;
 
   espeakedit = callPackage ../applications/audio/espeak/edit.nix { };
 
@@ -12936,7 +12936,7 @@ with pkgs;
     generated = import ../applications/networking/browsers/firefox-bin/beta_sources.nix;
   };
 
-  firefox-beta-bin = res.wrapFirefox firefox-beta-bin-unwrapped {
+  firefox-beta-bin = super.wrapFirefox firefox-beta-bin-unwrapped {
     pname = "firefox-beta-bin";
     desktopName = "Firefox Beta";
   };
@@ -12947,7 +12947,7 @@ with pkgs;
     generated = import ../applications/networking/browsers/firefox-bin/devedition_sources.nix;
   };
 
-  firefox-devedition-bin = res.wrapFirefox firefox-devedition-bin-unwrapped {
+  firefox-devedition-bin = super.wrapFirefox firefox-devedition-bin-unwrapped {
     nameSuffix = "-devedition";
     pname = "firefox-devedition-bin";
     desktopName = "Firefox DevEdition";
@@ -16818,7 +16818,7 @@ with pkgs;
     inherit (darwin.apple_sdk.frameworks) CoreServices SystemConfiguration;
   };
 
-  faust = res.faust2;
+  faust = super.faust2;
 
   gajim = callPackage ../applications/networking/instant-messengers/gajim {
     inherit (gst_all_1) gstreamer gst-plugins-base gst-libav;
@@ -17150,7 +17150,7 @@ with pkgs;
   mfcl3770cdwlpr = (callPackage ../misc/cups/drivers/brother/mfcl3770cdw { }).driver;
   mfcl3770cdwcupswrapper = (callPackage ../misc/cups/drivers/brother/mfcl3770cdw { }).cupswrapper;
 
-  samsung-unified-linux-driver = res.samsung-unified-linux-driver_4_01_17;
+  samsung-unified-linux-driver = super.samsung-unified-linux-driver_4_01_17;
 
   sane-backends = callPackage ../applications/graphics/sane/backends (config.sane or {});