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spip: init at unstable-2023-04-19 #247476

Merged
merged 1 commit into from
Jun 24, 2024
Merged

spip: init at unstable-2023-04-19 #247476

merged 1 commit into from
Jun 24, 2024

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apraga
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@apraga apraga commented Aug 6, 2023

Description of changes

A genomic tool to compute splice preductions, used in germline analysis. This tool is quite popular, open-source and with few dependencies.

Website: https://github.com/raphaelleman/SPiP

Things done

  • Built on platform(s)
    • x86_64-linux
    • aarch64-linux
    • x86_64-darwin
    • aarch64-darwin
  • For non-Linux: Is sandbox = true set in nix.conf? (See Nix manual)
  • Tested, as applicable:
  • Tested compilation of all packages that depend on this change using nix-shell -p nixpkgs-review --run "nixpkgs-review rev HEAD". Note: all changes have to be committed, also see nixpkgs-review usage
  • Tested basic functionality of all binary files (usually in ./result/bin/)
  • 23.11 Release Notes (or backporting 23.05 Release notes)
    • (Package updates) Added a release notes entry if the change is major or breaking
    • (Module updates) Added a release notes entry if the change is significant
    • (Module addition) Added a release notes entry if adding a new NixOS module
  • Fits CONTRIBUTING.md.

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@FliegendeWurst FliegendeWurst left a comment

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Thank you for packaging SPiP.

pkgs/applications/science/biology/spip/default.nix Outdated Show resolved Hide resolved
pkgs/applications/science/biology/spip/default.nix Outdated Show resolved Hide resolved
pkgs/top-level/all-packages.nix Outdated Show resolved Hide resolved
Comment on lines 11 to 19
transcriptome19 = fetchurl {
url = transcriptome-url + "/transcriptome_hg19.RData";
sha256 = "sha256-E8UmHoNoySSIde+TRE6bxVP0PrccpKDvIHBGCvWnYOw=";
};

transcriptome38 = fetchurl {
url = transcriptome-url + "/transcriptome_hg38.RData";
sha256 = "sha256-mQMMZVN1byXMYjFoRdezmoZtnhUur2CHOP/j/pmw8as=";
};
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Note to other reviewers: downloading these files takes way longer than expected for 800 MB.

pkgs/applications/science/biology/spip/default.nix Outdated Show resolved Hide resolved
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apraga commented Nov 12, 2023

Not sure why the check "pkgs/by-name" fails but nixpkgs-review works on my end.

A genomic tool to compute splice preductions.
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Result of nixpkgs-review pr 247476 run on x86_64-linux 1

1 package built:
  • spip

@JohnRTitor JohnRTitor changed the title spip: unstable 2022-11-22 spip: init at unstable-2023-04-19 Jun 24, 2024
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Result of nixpkgs-review pr 247476 run on x86_64-linux 1

1 package built:
  • spip

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LGTM

@JohnRTitor JohnRTitor merged commit 759a060 into NixOS:master Jun 24, 2024
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3 participants